BAC Information

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BAC

Clone NameMSMg01-425P22
Chromosome3 (Build37)
Map Location 78,424,092 - 78,424,486
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626461, LOC667526, LOC626479, LOC100041691
Downstream geneLOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425P22.T7 (MSMg01no425_p22.b1)MSMg01-425P22.TJ (MSMg01no425_p22.g1)
ACCAG519544AG519545
length763744
length of high quality
(start - end)
395 (57 - 451)533 (64 - 596)
definitionCHROMAT_FILE: MSMg01no425_p22.b1 PHD_FILE: MSMg01no425_p22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:22 2005CHROMAT_FILE: MSMg01no425_p22.g1 PHD_FILE: MSMg01no425_p22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCGCTTTACGACTCATTATTCCGAGAGGATCCGCGGAATTCCATCATT
GGCATACATGATAATTGTACATTTATCTTTATAAGAAACTTCCAAATTAT
TGGTTTTAAATAAAATCACAAGAGAACAGCTTTTCTTCATGGTCACCAGC
CTCTACTGCTGTCTACTCTAATAAGTGCAGTATTATATAGTTTCAATTTT
TACTTTTCTACATTATGATAACTTGGTAACCTGGCACATCACTTGGTGAG
CTGGTTTTTCTATAGAGAACCTCTCAGGCAAAATGTCTATTGCTTATTTC
TGTTTAGAATTTTTTATCATTGACTTTTAGAGTTCTTTACATAATTTATA
AATAAATTTTTGGTCAGGTATTTTCCCTGGCTTACACCTTGTAAGTTCAC
CTTCTTATAAGATACCTCACGAGGAAAATACTTCTGATTTGATATTCAAT
ATATTGATATTTCCCTTTTATGGGTCCCTGCGTTTGGTCCATGAACTCCT
TTTCTTAGACTTATATCTGGTTGTCTTCTAGCCTACCTGTTTTACAAAGA
AAGTTTTAATGATTTGCACATTTTATACTTAATTTTACTGCCTAGAGCAA
CGTGTTTTTATGATTAACCATCCCCTCCAGAATTTACCTGCCGAACGTTG
CCACCATTGGATGTGTTTTTCCCCCTTGGCATACTTGGCAGGATTCGTCC
TGTTTATTTTAGGACGCCCATTTTGTTTTACGGACGCTTGATTCTCTGCA
CCGAACAAATGTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCACCGTAGGAATGGCGAATAGCAGAGAAGCACCTGA
AAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACC
CTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGG
TGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATT
GTTGGTGGAATTGCAAGCTTGTATAACCACTCCGGAAATAAGTCTGGCAG
TTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCT
TCTGGGCATATATCCAGAAGATGTCCCAACTGGTAAGAAGGACACATGCT
CCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAA
CCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTA
CACAATGGAGTACTACTCGGCTATTAAAAAGAATGAATTTATGAAATTCC
TAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAA
TCACAAAGGAACTCTCACAATATGTACTCACTGATAAGTGGATATTAGCC
CAGAAACTTAGGATACCCAAGATATAAGATACCATTTGCTAAACACTTTA
AACTTCCAGAGAATGGAAAACCAAAGTGTGGACCCTTTGCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_p22.b1 MSMg01no425_p22.b1 CHROMAT_FILE:
MSMg01no425_p22.b1 PHD_FILE: MSMg01no425_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:22 2005
         (395 letters)



>mm_chr3_78424003_78424797
          Length = 795

 Score =  756 bits (391), Expect = 0.0
 Identities = 394/395 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgataattgtacatttatctttataagaaacttccaaattattggttttaaataaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 catgataattgtacatttatctttataagaaacttccaaattattggttttaaataaaat 425

                                                                       
Query: 61  cacaagagaacagcttttcttcatggtcaccagcctctactgctgtctactctaataagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cacaagagaacagcttttcttcatggtcaccagcctctactgctgtctactctaataagt 365

                                                                       
Query: 121 gcagtattatatagtttcaatttttacttttctacattatgataacttggtaacctggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gcagtattatatagtttcaatttttacttttctacattatgataacttggtaacctggca 305

                                                                       
Query: 181 catcacttggtgagctggtttttctatagagaacctctcaggcaaaatgtctattgctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 catcacttggtgagctggtttttctatagagaacctctcaggcaaaatgtctattgctta 245

                                                                       
Query: 241 tttctgtttagaattttttatcattgacttttagagttctttacataatttataaataaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tttctgtttagaattttttatcattgacttttagagttctttacataatttataaataaa 185

                                                                       
Query: 301 tttttggtcaggtattttccctggcttacaccttgtaagttcaccttcttataagatacc 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tttttggtcaggtatttttcctggcttacaccttgtaagttcaccttcttataagatacc 125

                                              
Query: 361 tcacgaggaaaatacttctgatttgatattcaata 395
           |||||||||||||||||||||||||||||||||||
Sbjct: 124 tcacgaggaaaatacttctgatttgatattcaata 90


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)