BAC Information

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BAC

Clone NameMSMg01-426C06
Chromosome3 (Build37)
Map Location 94,910,785 - 94,911,028
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a
Downstream geneVps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426C06.T7 (MSMg01no426_c06.b1)MSMg01-426C06.TJ (MSMg01no426_c06.g1)
ACCAG519654AG519655
length839815
length of high quality
(start - end)		312 (38 - 349)245 (166 - 410)
definitionCHROMAT_FILE: MSMg01no426_c06.b1 PHD_FILE: MSMg01no426_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:33 2005CHROMAT_FILE: MSMg01no426_c06.g1 PHD_FILE: MSMg01no426_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTCA
GATCTCATCTTCCACACAGGGTCGGGGGCGGCTCACAACCTGTAACTCCA
GCTCCAGGGGATCTGACGTCCTCTGGGCTACTCTGTACACTGCACACACA
GGTGCAAAAATAAATGATAAACATTAATCATAAAATAAATAGCTAGGTGT
GGTGGCGCAAGCCTTTAATCCCAGCCCTTGGGAGGCAGAAGCAGGCGAAT
CTCTGTGAGTTTGAGGTCAGCCTGGTCCACAGAGTGAGTTCCAGGACAGC
CAGGGCTACACAGAGAAACCCTGTCTCATAAAAGAAAAAAAGAAAAGAAA
AATAAAAAAGGGAGGAAGGGGGAAGGAAGGAAAGGAAGAAAAGTAAGGAT
AACATGATTTCTCCCCTTTCTTTCTCTCTCCCCCTTCCTTTTATATTCTC
CTTTCTTTTTTTTACCTCTCTCTTTTATCTCTCTCTCTCTCTTCTTTTTT
TCTTCTTCTTCCTTTTTCCTTAACTTCCCATTTTTTTTCATCTTACTCAA
ATTTTTTTATTTCTTCTTTTTCCTCTCTTTTTTATTTCTTTTACTTTATC
CTTTCATCCCTTTCTTTCTTCCTTATCTTATCTATTTCTTACTCCCCCCC
CTTCTTACCTCCCTTATTTCCATAACTTTTTCCTTTTTACTTCCCTTTTT
TCACTTTCTCTAATATCTCCTTCTCCTCTTCCCTTTTTATTCTTAATATA
AAATCAACCTACCTATATCTCATACATAATTCATTCTATTATCCCTTTAT
CTTCTTACTTCCTTTTCTCCTTCATCTATTTTTTCCCTG

TTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTGCGCAATTCTTGATGGTTGTGATGTTTTGTAGTGCACAAG
AGCTTAACATTTCGGACTTGACACAGAGCTGCGTTCCGAATTCTTTCXXX
XXXXXXXXXXXXXXXAGCTCAGTCCATCTCGGTCCAGCTGATTCTTAACA
AGAGTTCTTAGCAACCCGATCAAAGATACGAACCTATATTGGCCTACTGA
GCCACCGTAGACTCACGGTCTTCGGTCGGTGGATTCCTTGGGGTGTGACG
TGCATCTGTCACGTGATCCGAATTCCTCTCTGATTGGCTTCTCTTTTCTC
CGGCTAGATCGACGAACGCCGAGAAGCTGTGGCGCATGCGCAATACCGGG
GTTTCCTTGGGCGCCCACCCTGAGCCGAGCGGTGTAGTTGGGGATAAACT
TGCTTTGTTCGTTTAGTTTATTTCCTTTCTTTTCTTATCCTCCTGCTTTT
TCTTCTTTCCTCCCTCTTTTTTTTTCCTTTCTTCTTTCTCTCTTTTTATC
TTTTTCTCTCACGTTTTTCTACCTTACTCTCATCTTTTCTTTTTTTCTCT
TTATTCCTCTTCCCCTCTCCTATCGTTCTCCTTTTTTCTCTCTTTCTTTT
TTTTTTTTTTTCCTTTCTGTCCTCTTTTCTTTCCCTCTCCTTCTTTTTCT
TTACCCTTTTCTCTATCTTCCTTTTCTCTTCCCTATTTCCCGTTCCATTC
CTTTCCTTTCGTTCTCACATCCCACCGTTTATTTTTTTCCCATTTTTTTA
CGTTCTTACCTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_c06.g1 MSMg01no426_c06.g1 CHROMAT_FILE:
MSMg01no426_c06.g1 PHD_FILE: MSMg01no426_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:33 2005
         (245 letters)



>mm_chr3_94910585_94911228
          Length = 644

 Score =  420 bits (217), Expect = e-122
 Identities = 238/245 (97%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctcagtccatctcggtccagctgattcttaacaagagttcttagcaacccgatcaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agctcagtccatctcggtccagctgattcttaacaagagttcttagcaacccgatcaaag 385

                                                                       
Query: 61  atacgaacctatattggcctactgagccaccgtagactcacggtcttcggtcggtggatt 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 384 atacgaacctatattggcctactgagccaccgtagactcacggtctacggtcggtggatt 325

                                                                       
Query: 121 ccttggggtgtgacgtgcatctgtcacgtgatccgaattcctctctgattggcttctctt 180
           |||||||||||| | | |||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 324 ccttggggtgtggcat-catctgtcacgtgatccgaagtcccctctgattggcttctctt 266

                                                                       
Query: 181 ttctccggctagatcgacgaacgccgagaagctgtggcgcatgcgcaataccggggtttc 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttctccggctagatagacgaacgccgagaagctgtggcgcatgcgcaataccggggtttc 206

                
Query: 241 cttgg 245
           |||||
Sbjct: 205 cttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 644
Length adjustment: 9
Effective length of query: 236
Effective length of database: 635
Effective search space:   149860
Effective search space used:   149860
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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