Query= MSMg01no426_l06.b1 MSMg01no426_l06.b1 CHROMAT_FILE:
MSMg01no426_l06.b1 PHD_FILE: MSMg01no426_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:20 2005
(488 letters)
>mm_chr3_3882277_3883164
Length = 888
Score = 843 bits (436), Expect = 0.0
Identities = 472/484 (97%), Gaps = 1/484 (0%)
Strand = Plus / Plus
Query: 5 gaattcatatgtgcttatctttatgatcattacagacccttgttttcttagtgtcttaca 64
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatatgtgcttagatttatgatcattacagacccttgttttcttagtgtcttaca 264
Query: 65 tcagcgctagttcttatattttttcatctctagttcaatgtttattgctgagtgtttttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcagcgctagttcttatattttttcatctctagttcaatgtttattgctgagtgtttttt 324
Query: 125 taattaggtatttatttcatttatatttccaatgctatcacaaaagtccctcacaccctc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taattaggtatttatttcatttatatttccaatgctatcacaaaagtccctcacaccctc 384
Query: 185 ccacaccgacttccccaacaacccactcccatttcttggcccaggcgttcccctctacta 244
|||||||||||||| || ||||||||||||||||||| || ||||||||||||||||||
Sbjct: 385 ccacaccgacttcctcaccaacccactcccatttctttgcg-aggcgttcccctctacta 443
Query: 245 aggcatataaagtttgcacaaccaatgctcctctctttccactgatagccaaagaggcca 304
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 aggcatataaagtttgcacaaccaatgcgcctctctttccactgatagccaaagaggcca 503
Query: 305 tcttctgatacatatgcagctagacacacgagctccgggggtactggttagtttctattt 364
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 504 tcttctgatacatatgcagctagacacacgatctccgggggtactggttagttcctattt 563
Query: 365 ttgttccacctatagagttgcagatcctcccaactccttggatactttctctagctcctc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttgttccacctatagagttgcagatcctcccaactccttggatactttctctagctcctc 623
Query: 425 cactgggggccctgttatccatccaatagctgactgtgatcatctacttctgtgtttgct 484
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 624 cactgggggccctgtgatccatccaatagctgactgtgatcatccacttctgtgtttgct 683
Query: 485 aggc 488
||||
Sbjct: 684 aggc 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no426_l06.g1 MSMg01no426_l06.g1 CHROMAT_FILE:
MSMg01no426_l06.g1 PHD_FILE: MSMg01no426_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:20 2005
(519 letters)
>mm_chr3_4106753_4107669
Length = 917
Score = 969 bits (501), Expect = 0.0
Identities = 514/521 (98%), Gaps = 6/521 (1%)
Strand = Plus / Minus
Query: 1 ttcatcagtgcaactacactggagttgtctgtggttttgtaagtgctcaaccattttatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ttcatcagtgcaactacactggagttgtctgtggttttgtaagtgctcaaccattttatt 479
Query: 61 ataagtcactcaaataaactcacagaaagggtgcaaataaaacaatacagataagattaa 120
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ataagtcactc----aaactcacagaaagggtgcaaataaaacaatacagataagattaa 423
Query: 121 ttctgtgcttggcaaggctagaaatacaggatctgttttggcaattcttaaaatgtctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttctgtgcttggcaaggctagaaatacaggatctgttttggcaattcttaaaatgtctgg 363
Query: 181 agagacagattgttcttaac--tttttttttttttatcgagttaatactctatataggcc 238
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 362 agagacagattgttcttaactttttttttttttttatcgagttaatactctatataggcc 303
Query: 239 atgccctgggttttagtctgcaatttcaaataccatttgacagttttccattcatcagta 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atgccctgggttttagtctgcaatttcaaataccatttgacagttttccattcatcagta 243
Query: 299 caacttaagttataatcattttgatttaatttactttcactttctatccatctgtctgtc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 caacttaagttataatcattttgatttaatttactttcactttctatccatctgtctgtc 183
Query: 359 tatctatctacctatctttctatttgtatagtcatgaggacagtcctgcatgccaaggta 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tatctatctacctatctttctatttgtatagtcatgaggacagtcctgcatgccaaggta 123
Query: 419 tgcatgttttggtaagagaaaaatttacaggaatcacttctctccttcctcaatgtgaat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tgcatgttttggtaagagaaaaatttacaggaatcacttctctccttcctcaatgtgaat 63
Query: 479 ctcaagaatcagcctaagactggcaagaagacactttatct 519
|||||||||||||| ||||||||||||||||||||||||||
Sbjct: 62 ctcaagaatcagcccaagactggcaagaagacactttatct 22
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 917
Length adjustment: 10
Effective length of query: 509
Effective length of database: 907
Effective search space: 461663
Effective search space used: 461663
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
