BAC Information

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BAC

Clone NameMSMg01-426P09
Chromosome3 (Build37)
Map Location 62,341,670 - 62,342,068
singlet/doubletsinglet
Overlap geneGpr149
Upstream geneLOC669910, LOC676965, 4631416L12Rik, Dhx36
Downstream geneLOC676984, LOC666967, Mme
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426P09.T7 (MSMg01no426_p09.b1)MSMg01-426P09.TJ (MSMg01no426_p09.g1)
ACCAG520275AG520276
length811771
length of high quality
(start - end)		396 (70 - 465)493 (74 - 566)
definitionCHROMAT_FILE: MSMg01no426_p09.b1 PHD_FILE: MSMg01no426_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:41 2005CHROMAT_FILE: MSMg01no426_p09.g1 PHD_FILE: MSMg01no426_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTC
TCCTTTGTCTCGAGAAAAAGTATAAGCTTGTGAATAAGCAAAAAAAAAAG
TATAAACATACTAATGTGGTAACATTGTAGCTGTTAAAACTCAGCCAAGA
AACAAGATACAGTATATGATGAAGATGCTATTTCAAAATAAGTGGAGAAG
CTGGATATGGTGGCCAAGGCCTATAATCTCCAAACTTAGGAGGTAGAGGA
AGTAAGATCATGAATCTGAGACCAGTCTTCATCTCAAAACAAGATCATGG
TTCAAAACAACTACAGAATATCAAGAAGAATAACAGAATGTTATTTTGTT
TTTATGTAAATTTTTTGAAGCAAATAAAAATGCAAAATAATATTACTGTC
CAAAATATATTTTTGTATTTTGACCATGCTGAGTAAGAGGTGTTAGTTTT
AGGTATATGGGAAGATCTTCTCATCATTTTCTTGGATAAAACTAAAATGT
ATGGGACTTTATTAGACATCTCTTTTCTTGTCCCATCTCAATAATCCATT
TTAATAACCCGGAACTATTTCTTTTCATAGTCTGGGTTTTTCTTACATAT
TTTAAGTGTCCCATTTTCTTTTCCTCTGTTTAAAATTTTTTCCTCTTTAC
TTGCTATATTTTCCCCTATTGTTGTCTCTCGGATCAATCTTTTTCCTTTC
TTTCTTTCTCCTACTTTTCCTTTACCCCTACTCCCTTTAAATATCCTTCA
CACTCCACTCTAATTAGCCTCATATTTTATTCTCTATTAATTATTTTTTT
ATTCTCTCTCT

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTTCAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCCATTAAGCTATTAAAAAGAATG
AATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTG
AGTGAGGTACACATTTCCAAAGAACTTCACCCATATGGATTCCCTGAAAA
ATGGAATTTAACCCCCAACCCAGGATACTCCGGAAATAAAAAAAAATTTG
TTTAACCCCGGGAACCCCTCAAAAAAGGAAAATGGAGGGGGGGACATAAG
CCCCCCCTTTAAATTTGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_p09.b1 MSMg01no426_p09.b1 CHROMAT_FILE:
MSMg01no426_p09.b1 PHD_FILE: MSMg01no426_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:41 2005
         (396 letters)



>mm_chr3_62341470_62342268
          Length = 799

 Score =  725 bits (375), Expect = 0.0
 Identities = 392/399 (98%), Gaps = 3/399 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtataagcttgtgaataagcaaaaaaaaaa---gtataaacatactaatgtggtaacatt 57
           ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||
Sbjct: 201 gtataagcttgtgaataagcaaaaaaaaaaaaagtataaacatactaatgtggtaacatt 260

                                                                       
Query: 58  gtagctgttaaaactcagccaagaaacaagatacagtatatgatgaagatgctatttcaa 117
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagctgttaaagctcagccaagaaacaagatacagtatatgatgaagatgctatttcaa 320

                                                                       
Query: 118 aataagtggagaagctggatatggtggccaaggcctataatctccaaacttaggaggtag 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataagtggagaagctggatatggtggccaaggcctataatctccaaacttaggaggtag 380

                                                                       
Query: 178 aggaagtaagatcatgaatctgagaccagtcttcatctcaaaacaagatcatggttcaaa 237
           |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 381 aggaagtaagatcatgaatctgagaccagtcttcctctcaaaacaagaccatggttcaaa 440

                                                                       
Query: 238 acaactacagaatatcaagaagaataacagaatgttattttgtttttatgtaaatttttt 297
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaactacagaatagcaagaagaataacagaatgttattttgtttttatgtaaatttttt 500

                                                                       
Query: 298 gaagcaaataaaaatgcaaaataatattactgtccaaaatatatttttgtattttgacca 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaagcaaataaaaatgcaaaataatattactgtccaaaatatatttttgtattttgacca 560

                                                  
Query: 358 tgctgagtaagaggtgttagttttaggtatatgggaaga 396
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgctgagtaagaggtgttagttttaggtatatgggaaga 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 799
Length adjustment: 9
Effective length of query: 387
Effective length of database: 790
Effective search space:   305730
Effective search space used:   305730
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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