Query= MSMg01no427_h11.b1 MSMg01no427_h11.b1 CHROMAT_FILE:
MSMg01no427_h11.b1 PHD_FILE: MSMg01no427_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:21 2005
(541 letters)
>mm_chr3_129047820_129048760
Length = 941
Score = 953 bits (493), Expect = 0.0
Identities = 526/537 (97%)
Strand = Plus / Plus
Query: 5 gaattcctcaatttcctctgagacactttgcatatggagtgtgcatcatcgataatgaaa 64
||||||||||||| | |||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 205 gaattcctcaattgcttctgagacactttgcatatggagtgtgcatcatcaacaatgaaa 264
Query: 65 tttactattttgtgcttttctttagcatctgaaactctgtagtgtggattctgaaagagc 124
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 265 tttactattttgtgcttttctttagcatctgaagctctgtagtgtggattctgaaagagc 324
Query: 125 aatggtacaaattgactcatttgtttatggttaagttcattacatggagacagctgaatt 184
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatggtacaatttgattcatttgtttatggttaagttcattacatggagacagctgaatt 384
Query: 185 tgataatcaaaggctaaattacctttgaaggccaatgtggttttgatttttcgatagccc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgataatcaaaggctaaattacctttgaaggccaatgtggttttgatttttcgatagccc 444
Query: 245 catagtatggatttttctttctcccttctgcatctaagcagttcttataatctttgctgt 304
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 445 catagtatggatttttctttctcccttctgcagctaagcagttcttatcatctttgctgt 504
Query: 305 aaaaactcttgactccattgtggtcagtggagtatagtgagcagaggtttttctcttgca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaaactcttgactccattgtggtcagtggagtatagtgagcagaggtttttctcttgca 564
Query: 365 gatctggccaataaaagccagctgtgtcacccaccaaaactctccgtccagaccgctagg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gatctggccaataaaagccagctgtgtcacccaccaaaactctccgtccagaccgctagg 624
Query: 425 tcacattgcatatgcttaaggacagtgaagcttctcttgttcttggcacttgaagtgact 484
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 625 tcacattgcatatgcttaaggacagtgcagcttctcttgttcttggcacttgaagtgact 684
Query: 485 gagtatctgtagtttgccattatcttatttgtattttaagaatctagagcaatgtca 541
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 685 gagtatctgtagtttgccattttcttatttgtattttaagaatctagagcaatgtca 741
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no427_h11.g1 MSMg01no427_h11.g1 CHROMAT_FILE:
MSMg01no427_h11.g1 PHD_FILE: MSMg01no427_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:21 2005
(245 letters)
>mm_chr3_129202494_129203138
Length = 645
Score = 375 bits (194), Expect = e-108
Identities = 226/244 (92%), Gaps = 12/244 (4%)
Strand = Plus / Minus
Query: 1 agatcatcgcacttggcagtaaattccttcacctgcccatccatcttgcattcatctgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agatcatcgcacttggcagtaaattccttcacctgcccatccatcttgcattcatctgcc 318
Query: 61 caggtgtcacacttaaaaatgaatctattcattattagatagtgtttgcaccttctcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 caggtgtcacacttaaaaatgaatctattcattattagatagtgtttgcaccttctcttt 258
Query: 121 tctattagtatgggtaatgatgcacttacttgataggcagctcctcacacgtgtgtgcac 180
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 257 tctattagtatgggtaatgatgcacttacttgataggcagctcctcgcatgtgtgtgcac 198
Query: 181 agacgcgcacgcacacacacacacacacacacacactcacacacacagaggttttactga 240
|| ||||| ||| |||||||||||||||||| ||| |||||||||||||
Sbjct: 197 aggcgcgcgcgcgcacacacacacacacacagaca------------gaggttttactga 150
Query: 241 cagt 244
||||
Sbjct: 149 cagt 146
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
