Query= MSMg01no428_b01.b1 MSMg01no428_b01.b1 CHROMAT_FILE:
MSMg01no428_b01.b1 PHD_FILE: MSMg01no428_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:07 2005
(521 letters)
>mm_chr3_40792977_40793897
Length = 921
Score = 812 bits (420), Expect = 0.0
Identities = 493/536 (91%), Gaps = 31/536 (5%)
Strand = Plus / Plus
Query: 5 gaattctgaaagatagc-attactttgttttaggcatatgaggctgaaaggtaaagttgg 63
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gaattctgaaagaaagggattactttgttttaggcatatgaggctgaaaggtaaagttgg 241
Query: 64 gtcagagagtggcatgtgacagacagcaaagcagaagtgtttggtgtgctcagatttagg 123
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 242 gtcagagagtggcatgtgacag----caaagcagaagtgtttggtgtgctcagatttagg 297
Query: 124 ccagactagacgctaattcggctcggccagaaggatcttcagagctgaagcttgggcatg 183
|||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 298 ccagactagatgctaattcggctctgccagaaggatcttcatagctgaagcttgggcatg 357
Query: 184 tcgcatcagccatagctattttacatgaacacaaggaagtgcaccttttagcattagagc 243
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 358 tcgcatcaaccatagctattttacatgaacacaaggaagtgtaccttttagcattagagc 417
Query: 244 agatttaatatgaaaacaaccccacagattgtatgtatacattgtgcatcatgatgtaca 303
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 418 agatttaatatgaaaacaaccccacagattgtatgtatacattgtgtatcatgatgtaca 477
Query: 304 aaggctcagccatagagagctttctatgtgatcctataaggttttatttttcttgtcttt 363
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 478 aaggctcagccatagagagctttctatgtgatcctaaaaggttttatttttcttgtcttt 537
Query: 364 ctgaatgcacagg--------------------------aaataatttccatgtctaggc 397
||||||||||| | |||||||||||||||||||||
Sbjct: 538 ctgaatgcacatgtctaataattaattataataaataataaataatttccatgtctaggc 597
Query: 398 cttgcatccttgtgattcagcaagtcagtgccttgtggcagatgaagtaagggccacccc 457
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cttgcttccttgtgattcagcaagtcagtgccttgtggcagatgaagtaagggccacccc 657
Query: 458 aaatttagggagtctgtatcaatccttttactcaaccttgtgtgtgtgtgtgtgtg 513
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 658 aaatttagggagtctgtatcaatccttttactcaaccttgtgtgtgtgtatgtgtg 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no428_b01.g1 MSMg01no428_b01.g1 CHROMAT_FILE:
MSMg01no428_b01.g1 PHD_FILE: MSMg01no428_b01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:08 2005
(489 letters)
>mm_chr3_40974509_40975397
Length = 889
Score = 600 bits (310), Expect = e-175
Identities = 313/314 (99%)
Strand = Plus / Minus
Query: 1 agacctgggaattcagtctcaaatttcactctggtgcttatgattgtgaccagggctggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 agacctgggaattcagtctcaaatttcactctggtgcttatgattgtgaccagggctggc 255
Query: 61 acaggatatttgtattaaaagctcccaaattcgggccaggcacgaaggtacgtgagaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 acaggatatttgtattaaaagctcccaaattcgggccaggcacgaaggtacgtgagaggc 195
Query: 121 aggtggatctctgtgagttcaaggcttggctggtctatatagtgagttcctggccaagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 aggtggatctctgtgagttcaaggcttggctggtctatatagtgagttcctggccaagca 135
Query: 181 gggctacacagtgagacatatttttatgaagggaagacatgatatgctgtagccaaatgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gggctacacagtgagacatatttttatgaagggaagacatgatatgctgtagccaaatgc 75
Query: 241 cccactattctgctttctattgctgtgataaacacaacgaccagaagcaacctgaggagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 cccactattctgctttctattgctgtgataaacacaacgaccagaagcaacctgaggagg 15
Query: 301 agaggattcatttc 314
||||||||| ||||
Sbjct: 14 agaggattcgtttc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
