BAC Information

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BAC

Clone NameMSMg01-429A23
Chromosome3 (Build37)
Map Location 149,568,612 - 149,568,861
singlet/doubletsinglet
Overlap genenone
Upstream geneLphn2, LOC100040368, LOC668893, EG381483, LOC100040620
Downstream geneLOC100040633, LOC100040455, LOC100040463, LOC623554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429A23.T7 (MSMg01no429_a23.b1)MSMg01-429A23.TJ (MSMg01no429_a23.g1)
ACCAG521878AG521879
length764724
length of high quality
(start - end)
259 (39 - 297)511 (68 - 578)
definitionCHROMAT_FILE: MSMg01no429_a23.b1 PHD_FILE: MSMg01no429_a23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:25 2005CHROMAT_FILE: MSMg01no429_a23.g1 PHD_FILE: MSMg01no429_a23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
CTTCTCTGCTATATGCATGGTCTCTAGGACACAATCAAACTATATTATAC
AATGTAATGCATTGGAGTATTAACCCTTAATTATAAAGAAACAAATGACA
AATACTATATTAAAGAAAGTTAAATGTTAGAGTTTAAAAATACATACTCC
CTGGCCCATTGGACTTGCAAACTTTATATGCCTCAGTACAGGGGAACGCC
AGGGCCAAGAAGTGGGAGTGGGGGGGTAGGGAAGTTTTGGGGGNNTNTNN
NNNNNNNNNTTTTTTTTTTNTTNTTTNNNTTTTTTTTNNNNNTNNNTNNT
TTTTTTTTTTTTTTTTTTTTTTGGGGGGGGGGTTTTTTNTTTTTGTTTTT
TTCGGTTTTTTTGTTTTTGTGTTTTTTTTTTGTTGTNGGTTGTTGGTTTT
TTTTTGTTCCCTTTTCCCCCCCTCCCTCCTCCGTCCCCTCTTCCCCTTCC
CTCCTTCNTCTCCTTTCCTCTCGCCCCCCCCTCCCCTTCTCTTTCCTCTT
GCTCCCCCCCCCCCTCTCCTTCCCTTTCTCTTGTCTCTCCTTCTCCCTTT
GCCCCCTCCCTCCCTCCCCTCTTTCCTCTTTTCTTCTTCTTTCTCTTTTC
CCTCCTCTCTCCCTCTCTCCTTCTTCCTCCTTCCTCCNCCTCCCTTCCCT
CGCCTTTCTTTCCTCCCCTTCCTTCTTTTTTTCTCCCTTCTCTCCCCCCC
GTTTTTCCCTTTTN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTGTTTAGTTCTATACCTTATTTTTTGATTGC
GTTGCCTGGGATTCAGAAGTTAGCTTCTTGAGTTCTTTTTATATTTTGGA
TATTAGCCCTCTATCTGATGTGGGATTAATGAAGATCTTTTTCTCAATGT
GTAGGTGCTAATTTGTGTTACTGACTATGTCTTTTGCCTTACAGAAACTT
TCCAGTTTCATGAGGTCCCATTTATCAATTCTTGATCTTAGAGCATCAGC
CATTGGGGTTCAGTTTAAGAAATTTCCTCCTGTGCTAACAAGTTCAAGGC
TCTGTCCCACTTTCTCTACTATTAGATTCAGTGTATCTGATTTTATGTTG
CGATGATCTATCCACTTGGACTTGAGCTTTTTGCAAGGTGACAAAAAGGA
TCTATTTTCATTTTTCTACATACAGACATCCAGCTAGACCAGCACCATTT
ATTGAAGATGCTATCTTTTGCCATTCAATATTTTTGGCTTCTTTGTCAAT
GAACAAGTGTGCATAAGTGTGTAGGTTTATTTCTGGGTCTTCAATTCTAT
TCCATTGATCAACATGTCTGTCTCTGGACTAATACAATGCAGGGTTTGTG
CTTTTGTTTTTGCCTTTTTTTTTAAATCACTATTTTTCTGAGATAAGTTT
GAGGTTGGGGAAGCCGATTACCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_a23.b1 MSMg01no429_a23.b1 CHROMAT_FILE:
MSMg01no429_a23.b1 PHD_FILE: MSMg01no429_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:25 2005
         (259 letters)



>mm_chr3_149568408_149569066
          Length = 659

 Score =  478 bits (247), Expect = e-139
 Identities = 250/251 (99%), Gaps = 1/251 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcttctctgctatatgcatggtctctaggacacaatcaaactatattatacaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcttctctgctatatgcatggtctctaggacacaatcaaactatattatacaa 264

                                                                       
Query: 65  tgtaatgcattggagtattaacccttaattataaagaaacaaatgacaaatactatatta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtaatgcattggagtattaacccttaattataaagaaacaaatgacaaatactatatta 324

                                                                       
Query: 125 aagaaagttaaatgttagagtttaaaaatacatactccctggcccattggacttgcaaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagaaagttaaatgttagagtttaaaaatacatactccctggcccattggacttgcaaac 384

                                                                       
Query: 185 tttatatgcctcagtacaggggaacgccagggccaagaagtgggagtgggggggtaggga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttatatgcctcagtacaggggaacgccagggccaagaagtgggagtgggggggtaggga 444

                      
Query: 245 agttttggggg 255
           ||||| |||||
Sbjct: 445 agttt-ggggg 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)