BAC Information

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BAC

Clone NameMSMg01-429H11
Chromosome3 (Build37)
Map Location 6,025,480 - 6,025,916
singlet/doubletsinglet
Overlap genenone
Upstream geneZfhx4, Pxmp3, EG620382, EG667759, LOC100041165
Downstream geneLOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429H11.T7 (MSMg01no429_h11.b1)MSMg01-429H11.TJ (MSMg01no429_h11.g1)
ACCAG522188AG522189
length749736
length of high quality
(start - end)
509 (62 - 570)481 (77 - 557)
definitionCHROMAT_FILE: MSMg01no429_h11.b1 PHD_FILE: MSMg01no429_h11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:58 2005CHROMAT_FILE: MSMg01no429_h11.g1 PHD_FILE: MSMg01no429_h11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTA
CTTAAGAATCTCAAATGGCCAAGAAGCACATAAAGAATATTCAACATCCT
TAGTCATTGGAGAAATGCAAAGCTAAATGACCCCAAGATTGTACCTTAAA
CTAATCAGATTAACTAAAATAAAAAACCTCAAGTGACAGCAGATGCTGGC
AAGGATGTGGAGAAAGGGAAACACTCCTCCATAGCTGGTGGGGCTGCAAA
CTAGTACATGCACTCTGAAAATCAATCTGGTATTTCCTCAGAAACATCAA
AAATAGATCTACTTGAAGACCCAGCTATATTGCTTCTGGACATATACCCA
CAAAATACTCCACCATAGCACAAGGACATGTGCTCCACTAAGTTCATAAT
AGACTTACTTGTAATAGCCAGAATCTGGAAAAAATCTAGATGTCCCTGAA
CAGAAGAATGGATACAGAAAATATGCTTCAGTTATACAATGAAATACTAT
TCAGGTATTAAAAATGAGGACACCATGAAATTTGCATGCAACTGAGTCTA
AATAGAAAATATCATCCTGNCTGAGGTAATTCAGGCCCAAAAGAGCACAT
ATGGTACATAGTCACTGATATGTGGATATTAGGCCAAAATAGAGAAATCC
CTGAAACACCCCAATATTCTAGAAATTTACCAGATGTAAGGCCCAGAGAG
TGGGCTTTAATTCCCCTTATAAGGGGAGAGACCGAAGTGCAAAGGGGAG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTAATGATGACTCTACATTTAG
CCTAAACATACTTCTTTGAGTAACAGCAAAAATCTTGTCAATAGAAATCT
AAGACTTTTGAAGTGACAGAATAGTTATGTAAATAAATATATAAATAAGA
AAAGTAACACTTATCTTATATATTAGCTAAGGCACAGCTTAGTGATGCAG
AGTAACTGGCTAGGACCAAGTTCAAATGCAAATAAATAACTTGGTTGACT
AATGAACAATGTCTATATTCTTTTTTAAAAAAGAAGGATTTTCTAATGGG
CCAAAACACAAGTGTAAAGCTAAAGATTGACTCCAAATCCGCAACTATCC
TTCTTCTTCTCTCCCTCTCTCTCCTCCCTTCTTCTGGTTTTCTACCACCC
CTCCTTCTGTATCTTTGTCTCTGTGTCTCTGTCTCTGTCTGGCTCTCCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTC
TTTCAGAAACATTACTTATGTAAAAGAAAACGCAAATTTGTACATGGCGG
CCTACAAAGTAACGATATTTGCATAATCCAACACAAATCCTTTCCCTGCC
TTACAGGCCTTGATAAAAACAGGGATTTTTCACGAAACCCTATCTCTCCT
CGATTGAGTTTGACCCCCCCTTCTTATAAGCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_h11.g1 MSMg01no429_h11.g1 CHROMAT_FILE:
MSMg01no429_h11.g1 PHD_FILE: MSMg01no429_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:58 2005
         (481 letters)



>mm_chr3_6025331_6026206
          Length = 876

 Score =  758 bits (392), Expect = 0.0
 Identities = 427/442 (96%), Gaps = 7/442 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttaatgatgactctacatttagcctaaacatacttctttgagtaacagcaaaaatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ttttaatgatgactctacatttagcctaaacatacttctttgagtaacagcaaaaatctt 527

                                                                       
Query: 61  gtcaatagaaatctaagacttttgaagtgacagaatagttatgtaaataaatatataaat 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 526 gtcaatagaaatctaagacttttgaagtgacagaataattatgtaaataaatatataaat 467

                                                                       
Query: 121 aagaaaagtaacacttatcttatatattagctaaggcacagcttagtgatgcagagtaac 180
           |||||||||||||     ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 aagaaaagtaaca-----cttatatattagctaaggcacagcttagtgatgcagagtaac 412

                                                                       
Query: 181 tggctaggaccaagttcaaatgcaaataaataacttggttgactaatgaacaatgtctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tggctaggaccaagttcaaatgcaaataaataacttggttgactaatgaacaatgtctat 352

                                                                       
Query: 241 attcttttttaaaaaagaaggattttctaatgggccaaaacacaagtgtaaagctaaaga 300
           ||||  |  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 attcactggtaaaaaagaaggattttctaatgggccaaaacacaagtgtaaagctaaaga 292

                                                                       
Query: 301 ttgactccaaatccgcaactatccttcttcttctctccctctctctcctcccttcttctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ttgactccaaatccgcaactatccttcttcttctctccctctctctcctcccttcttctg 232

                                                                       
Query: 361 gttttctaccacccctccttctgtatctttgtctctgtgtctctgtctctgtctggctct 420
            ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 231 tttttctaccacccctccctctgtatctttgtctctgtgtctctgtctctgtctgtctct 172

                                 
Query: 421 c--ctctctctctctctctctc 440
           |  |||||||||||||||||||
Sbjct: 171 ctcctctctctctctctctctc 150


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 876
Length adjustment: 10
Effective length of query: 471
Effective length of database: 866
Effective search space:   407886
Effective search space used:   407886
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)