XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATTCTTCATTTCAGGGATATCTGGGCTCTTTTCAGCTTCTGAGTATTACA
TATAAGGTTGCTATGAACATAACAGAGCATGTGTCCTTGTGGTATGATGG
AGAATCTTTTGGGAATATGCCCAGGAGCTGTATAGTTAGGTCTTCATGTA
GAACTATTTCTAATTTTCTACTCAACTGCCAGCTTGATTTCCAAGTGGTT
GTACCAGTTTGCAGTCCCACCAGCAATGGAGGAGTAGTACTCTTCTCTAC
ATCCTTGCCAGCATCTGCTGTTACTGGAGGTTTTGATCTCAGCCATTCTG
ATTGGTATAAGGTAACATCAGAGCAGAGTTTTTATTTGCATTTCCCTAAT
GACTGAAGATTTTGAAAAAAATTTTAATGCTTCTTGGCCACTTGAGATTC
CTTTGTTTTAAATTTCTCTGTAGCTCTGTATCCCATATTTTAATTGAGTT
CTTTGGTTTTTTTTGGAGTCTAACTTTTTAAATTCTTTATATATTTTTGA
ACATTACCCCTCTGTTTAAAGTAGGGTTAGTTAAGATATTTTCTCAATCT
GTAGATTGTCATTTTGGCTTATTGATAAGGCCTTTTCCTTACAGAAGATT
TTCTTTGTCCTGAGATCGCATTTGTCAATTGTGGTTCTTAAACCTTGTGC
TAAAAACCAGGCCGTTCAGGAAATTTCCCTGTGGCAAGGGTTTCN

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCTTATTCATTTTCTAGTCTCAGAAATTCA
GAATTAACATTTCAGTTCAGGAAATAAGTTAAAATTTCCAAAAACAAATT
CCATTTGTCTACTGTCCCTGAATTCATTATTTTGTATCTTTTTTAAGAAC
AGTTATTTTTCAGATTATAATTAGCACTATTTGTATTAGTACACGTGGTT
AACTTGGGGATGTTTTAGCAATATTTTTTCTCTTGACTTGACGTAAATAT
GCTTTTCATTTTTAGGTGGCCATAGCCATGGTGAAGGGCTGTATCTCCTC
TCCTTAGCATGAGTGCTTACATTTCAAGATTTGTTATGCTGTTGAATATT
ACTGAACGTTTGAGTCTTCTCTACTTCTGTGCCTATGCTTAACTTGTGTC
ACTGGCCATGGATAACAAGCAAATTAGAATGTTGGCATCCTAGGTCCTTG
ACAGGGAAGGTTCTGTGTCAAGAATTTTCTACGCTATTAATATTGTCAAG
TAGCTGGTTTCTGACATCCTTAAATACACAAATACATTTACTATGATTTG
AAGAAATACCACTCAACCCCTCCGAGGGGAAACCAACCTGCTGGTTACAG
AGTTTTTCAGCACCTAAATATAATATTCCAAAATGGACAATACGCGCTTT
AACTTTCCCCCCATTTTTTAACCGGGGAATTTTTCCCAAT

Query= MSMg01no431_a07.g1 MSMg01no431_a07.g1 CHROMAT_FILE:
MSMg01no431_a07.g1 PHD_FILE: MSMg01no431_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:09 2005
         (484 letters)



>mm_chr3_45139753_45140636
          Length = 884

 Score =  882 bits (456), Expect = 0.0
 Identities = 477/484 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccttattcattttctagtctcagaaattcagaattaacatttcagttcaggaaataagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tccttattcattttctagtctcagaaattcagaattaacatttcagttcaggaaataagt 625

                                                                       
Query: 61  taaaatttccaaaaacaaattccatttgtctactgtccctgaattcattattttgtatct 120
           ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 624 taaaatttccaaaaacaaattccatttctctactgtctctgaattcattattttgtatct 565

                                                                       
Query: 121 tttttaagaacagttatttttcagattataattagcactatttgtattagtacacgtggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttttaagaacagttatttttcagattataattagcactatttgtattagtacacgtggt 505

                                                                       
Query: 181 taacttggggatgttttagcaatattttttctcttgacttgacgtaaatatgcttttcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taacttggggatgttttagcaatattttttctcttgacttgacgtaaatatgcttttcat 445

                                                                       
Query: 241 ttttaggtggccatagccatggtgaagggctgtatctcctctccttagcatgagtgctta 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 444 ttttaggtggccatagccatggtgaagggctgtatcccctctccttagcatgagtgctta 385

                                                                       
Query: 301 catttcaagatttgttatgctgttgaatattactgaacgtttgagtcttctctacttctg 360
           |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 384 cattccaagatttgttatgctgttgaatattactgaacgtttgagacttctctacttctg 325

                                                                       
Query: 361 tgcctatgcttaacttgtgtcactggccatggataacaagcaaattagaatgttggcatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgcctatgcttaacttgtgtcactggccatggataacaagcaaattagaatgttggcatc 265

                                                                       
Query: 421 ctaggtccttgacagggaaggttctgtgtcaagaattttctacgctattaatattgtcaa 480
           |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 264 ctaggtccttgacagggaagcttctgtgtcaagaattttctactctattaatattgtcaa 205

               
Query: 481 gtag 484
           ||||
Sbjct: 204 gtag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)