Query= MSMg01no431_b21.b1 MSMg01no431_b21.b1 CHROMAT_FILE:
MSMg01no431_b21.b1 PHD_FILE: MSMg01no431_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:17 2005
(457 letters)
>mm_chr3_120400218_120401073
Length = 856
Score = 845 bits (437), Expect = 0.0
Identities = 449/453 (99%), Gaps = 1/453 (0%)
Strand = Plus / Minus
Query: 5 gaattctccagaatatttcctcctgaaatttgtgatcatgcaacatcattaaaatatatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gaattctccagaatatttcctcctgaaatttgtgatcatgcaacatcattaaaatatatt 597
Query: 65 aatgaatccttcattcaacagacttttattgacacctatgaatttttaataaccatatta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aatgaatccttcattcaacagacttttattgacacctatgaatttttaataaccatatta 537
Query: 125 gccagaggtatttttcaaatacgaacatctaggaattaggtagaggatgatgaaccaaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gccagaggtatttttcaaatacgaacatctaggaattaggtagaggatgatgaaccaaat 477
Query: 185 gctccagcctggcaatagctaggtcattatctttcgagaaaaccaatgtggtattttttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gctccagcctggcaatagctaggtcattatctttcgagaaaaccaatgtggtattttttg 417
Query: 245 cactgttggagggaaaacattttagtttattgggagttcccaataaatgtcattcaggat 304
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 cactgttggagg-aaaacattttagtttattgggagttcccaataaatgtcattcaggat 358
Query: 305 ggggaatcaagagcagtccctacaaaaccacagctgagaacaagaagagctcctggttag 364
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 357 ggggaatcaagagcagtccctacaaaaccacagctgagaataagaagagctcctggttag 298
Query: 365 tggctgtttatgactcttttataagctgctactgtatttgaaagcctctaggcagactgt 424
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 297 tggctgtttatgactgttttataagctgctgctgtatttgaaagcctctaggcagactgt 238
Query: 425 atagacattccagagatttgaggtgaaactggc 457
|||||||||||||||||||||||||||||||||
Sbjct: 237 atagacattccagagatttgaggtgaaactggc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 856
Length adjustment: 10
Effective length of query: 447
Effective length of database: 846
Effective search space: 378162
Effective search space used: 378162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no431_b21.g1 MSMg01no431_b21.g1 CHROMAT_FILE:
MSMg01no431_b21.g1 PHD_FILE: MSMg01no431_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:17 2005
(479 letters)
>mm_chr3_120220343_120221220
Length = 878
Score = 919 bits (475), Expect = 0.0
Identities = 478/479 (99%), Gaps = 1/479 (0%)
Strand = Plus / Plus
Query: 1 tcctccatgtgagagagttttcaccttgaaggccaggagtgacagtctcaataaacagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctccatgtgagagagttttcaccttgaaggccaggagtgacagtctcaataaacagtg 260
Query: 61 ttaaaggagttccaagcttataaacatcatttacagtaattgattgcaccaaagatttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaaggagttccaagcttataaacatcatttacagtaattgattgcaccaaagatttga 320
Query: 121 aagaaacatcattggagcatgggtcttcatgataagcatatttttgtataaaatgaaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaaacatcattggagcatgggtcttcatgataagcatatttttgtataaaatgaaatt 380
Query: 181 gcttaataatatgaaagagcttcctatcaagctttcccaatcctcctgttaataaaatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttaataatatgaaagagcttcctatcaagctttcccaatcctcctgttaataaaatta 440
Query: 241 aatacagatttagatattttttgggaaaaaaaattagtgtgttatcctaaatttaattct 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 aatacagatttagatattttttgggaaaaaaaat-agtgtgttatcctaaatttaattct 499
Query: 301 actgcttaatggagtctgtgtcttctgattctttgaagcagtacaaagaggagagagaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 actgcttaatggagtctgtgtcttctgattctttgaagcagtacaaagaggagagagaaa 559
Query: 361 caggcaattcagagatagcactgcctcaagtttacagccatccagactgaaaacacaatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 caggcaattcagagatagcactgcctcaagtttacagccatccagactgaaaacacaatg 619
Query: 421 aggtgcacgagattacagaaaacaaaacaaaacaaaacaaaacagtttcttcttattaa 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aggtgcacgagattacagaaaacaaaacaaaacaaaacaaaacagtttcttcttattaa 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 878
Length adjustment: 10
Effective length of query: 469
Effective length of database: 868
Effective search space: 407092
Effective search space used: 407092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
