BAC Information

Click to search

BAC

Clone NameMSMg01-431F06
Chromosome3 (Build37)
Map Location 110,778,722 - 110,779,172
singlet/doubletsinglet
Overlap genenone
Upstream geneNtng1, LOC100043181, LOC100043183, Prmt6
Downstream geneLOC100043190, LOC668712, LOC625585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431F06.T7 (MSMg01no431_f06.b1)MSMg01-431F06.TJ (MSMg01no431_f06.g1)
ACCAG523612AG523613
length7771,303
length of high quality
(start - end)
455 (40 - 494)---
definitionCHROMAT_FILE: MSMg01no431_f06.b1 PHD_FILE: MSMg01no431_f06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:35 2005CHROMAT_FILE: MSMg01no431_f06.g1 PHD_FILE: MSMg01no431_f06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GTACAGGATCCATGGAAGAAAAAAAGGAGAATTATTTGGGGAAGTTCTAA
ATGAGGAAAGTGTGAGCAGGCAAGACAGAGGTGGGAATGGTTAATACTAA
TGATCTAGGATATGCAAACCTGGTGTTTTGGAATGCCATCTAGTATGGGA
TACATTTCTTGGAGTTGTTGGTTTATAGTAATGTTTCAAATAGATTGCCA
ACATTAAGAGGCTATTGCCTTAACCCCCAATCTAACAGAATATGAGAGGA
AAACCCTTCTGTAGAAGACATCACATACATGTGTCACAGGACACAGAGAA
ACCAGGCTGACATTAATGTGGATGACTCTCACATTGTGGATAGCTTTAAT
GTTACTAGAAGGCACTGTATAGACTTCTGAAGGAGAAATAATCTTACTGA
ACTATGAATCCTATGAACCCATATATTAACAGTTTTCAATCCTCAACAAA
GAGGTTTCATTTTTCAGTGAATAATGGCTTACTAGGAATTTACCTCTGGG
GATACTTTGACAGGACACTTGGTATCTACTTGCAAACCTTTTTCTGTTTC
AAGAAGTAGGTGGAACATTTTTTCCAAGTGTTTTCCCACCCTCCTCTGTA
TTCCTCCAGATGAGAATTTTCTGTTTTTATCCTTTTCCCCCATTTTTTTA
TATGGGGGTTTTTTCCCCCTTCCTTGATGTATCCTTCTCCTTGCGCGGTC
CTTTTTTCTCCTTCGCCAATTTTTCCN
AGCGGAGCAGCGAGGGAGCGAGGAGGACGTTAGCGAACTCGCGGTCCATA
TCTACTATATATACTACACTGATAATANTATATCTAAAATACAATCACTC
CCTACACTAATACTTTCTCTATATGCCATTCATATCGCGCACCAGCGATA
CGTAGATGTTGAGCCAACCACATGTGTCTGATAGTACGCAGCAGTACCGA
TTATTATAGAGATATATACACCTATTATATTATATCTACAGAACAGCCAC
ATCCGAGCACATTACTGGTCACTGCACAGAGGACGCAGCGCGGTAGATAN
GGAAGCGACTACATAACGCATTTGAAGAGTCACAAGTCCTCATAGGGAGC
TACACGTATAATTGATTATTATATGTTAAGCGGGCTCGGACTGTGCTTCA
CGTCACGCTTGTACTTTCATCCGCGGCACACCCTCGACCAGCACTCGACA
CCATAAACTGTATAAAGCGCCGCAATCGGTTTCTCCCCTGTATTCCCTTT
CTAAAACACCTATTGTGTGCGCACAACACGAATATCCACATTGCCAGACT
AGAGCGCACAGCCTACACGACCACATAGGCGGTGGCGGGGCGCGACGAAA
GTCGAGTTGGTTATGTAGAGTAAGCGCAGCTGTGTGCTGTGGTGTAGGAG
TGGCGATACAGCGCGCGGCGCGATGAGGGACGAGCACACGGACGCTCGCG
TCGGGACACCAGAGAACTGGCCGTGTCTGACTAGACCCCGCGCCGCTGGC
TAGGGTCCCCGCCTATAATAACGCCGCCCTCGTATACCGGACGGGGCGAT
ATTAATAATATGTGAGGGAATGATACGCACGACGCGCGGCGCGCGAGGCA
CGCGGAAGAGGCGCACGCGGCGTGTGCGTGTAACCCGCTCTGCACTGCAC
CCACTGTACCCTCCTACTAGTTGTTGAGTGGGTGGCGATATGATGAGATC
AGCTGTGGTCTGTATGGCCGCCGCGTCATCCTTCACTCCCGCGCGCGCAC
TGCTAATATTCTGTGTCGCCTATGTATATCACACGATATGCGAGCCGACT
GAGTGGATACACGCGCTACGTGGCCGACATATGTGTGTAGTCGCAATCTA
TCGTCTTACATAGCGTAACTCTTGGTATGACTCTTATTGTCGGGCGCCAC
TGTTGTGCGTGACTCATGATTCTCTCCGACTCGCCCCACCTACTATATCT
ACAGTCTCGCCGATATACGCGCGGGCTGCATACTCGCGAGGCGGACTGAC
ATATCGACGATCGATGTGATGTAAGCACGTCACCGTTAGTACGCTGTGAC
GCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_f06.b1 MSMg01no431_f06.b1 CHROMAT_FILE:
MSMg01no431_f06.b1 PHD_FILE: MSMg01no431_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:35 2005
         (455 letters)



>mm_chr3_110778518_110779372
          Length = 855

 Score =  799 bits (413), Expect = 0.0
 Identities = 442/453 (97%), Gaps = 4/453 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtacagga--tccatggaagaaaaaaaggagaattatttggggaagttctaaa 62
           |||||||||||||||  | |  ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtacaggaagtac--ggaagaaaaaaaggagaattatttggggaagttctaaa 262

                                                                       
Query: 63  tgaggaaagtgtgagcaggcaagacagaggtgggaatggttaatactaatgatctaggat 122
           ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 263 tgaggaaagtgtgagcaggcaagacagaggtgggaatggttaacactaacgatctaggat 322

                                                                       
Query: 123 atgcaaacctggtgttttggaatgccatctagtatgggatacatttcttggagttgttgg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 323 atgcaaacctggtgttttggaatgccatctagtatgggatacatttctttgagttgttgg 382

                                                                       
Query: 183 tttatagtaatgtttcaaatagattgccaacattaagaggctattgccttaacccccaat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tttatagtaatgtttcaaatagattgccaacattaagaggctattgccttaacccccaat 442

                                                                       
Query: 243 ctaacagaatatgagaggaaaacccttctgtagaagacatcacatacatgtgtcacagga 302
           |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 443 ctaacagaatatgagaggaaaacctttctgttgaagacatcacatacatgtgtcacagga 502

                                                                       
Query: 303 cacagagaaaccaggctgacattaatgtggatgactctcacattgtggatagctttaatg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cacagagaaaccaggctgacattaatgtggatgactctcacattgtggatagctttaatg 562

                                                                       
Query: 363 ttactagaaggcactgtatagacttctgaaggagaaataatcttactgaactatgaatcc 422
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 563 ttactagaaggcactgtatagacttctgaaggagaaataatcttactgaactatgagtcc 622

                                            
Query: 423 tatgaacccatatattaacagttttcaatcctc 455
           |||||||||||||||||||||||||||||||||
Sbjct: 623 tatgaacccatatattaacagttttcaatcctc 655


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)