BAC Information

Click to search

BAC

Clone NameMSMg01-432A24
Chromosome3 (Build37)
Map Location 118,396,803 - 118,537,137
singlet/doubletdoublet
Overlap geneDpyd
Upstream geneEG668759, Snx7, LOC100043260
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432A24.T7 (MSMg01no432_a24.b1)MSMg01-432A24.TJ (MSMg01no432_a24.g1)
ACCAG524173AG524174
length794781
length of high quality
(start - end)		283 (48 - 330)387 (76 - 462)
definitionCHROMAT_FILE: MSMg01no432_a24.b1 PHD_FILE: MSMg01no432_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:38 2005CHROMAT_FILE: MSMg01no432_a24.g1 PHD_FILE: MSMg01no432_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,396,803 - 118,397,081)(118,536,751 - 118,537,137)
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAATGCAATTTTTTTTATAAAGCAGATGGTTTGTTGACTACAT
TGCATTTAATCATGAAAATAGGAAAAATTGACCTCCCAACTTTAAAATAA
TGAAATGTGTATCTTTTAATTGGAGATGTCCTTTAGAATACTTACTGTCT
CTTTTTTGTGTAGTCATATTTCATAGATATTAGGTGGGTATCTATGTTTT
GGTTGTCAACATATGTATTTCACTATGCTGTTAGAAACAATTGTGTGTGT
CTGTGTGTGCATTTGTGTATGTGAGTATGTATGTGTGCATGTGCGCTCGT
GACGGTATGAATGTATGATTTGTTACAGGAATGTCTTCCGTAACCACTGT
TCGCTTTTGGTTTGCAACCCAAATCTCCCTCTTAGACATCGTTCATTTGA
TCTTGTCTTTCTGGTGTGGCCGTACGCCTGTTCGTTCTGGCTTACTTTGC
CGCTCCTTGTTATATCCCCCCATTTTTTGGGGTCTTTCGTTATTTTTCCC
TTCTCACATCATCCGGCCCATTTCCCCTCATTTCATATCTTCTTCCTTCT
TTCTTCCCTTCTCTCTTCGACCTTCGCTCTTTACGTTTCACCCTCTACCC
TCTACTTCTTTCATTCGTTTTACGACTTCTTTCTTCTCTTTTGATCAATT
CTCCCTGCTTTTTCCCTATATCCTTTTCTATGTCTTCTCTATCTTCTTCT
TCCTCGACTTTTGCCTTCTTTCCCCTAATTTTCTTCCTTTTTTG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCTTTATACATAAAACATATGTGC
AGTTTTAATAGTGGTATATGACACAAAATTTGAACATTTAAGGAATGTTA
CAGCACATTAAGTTTAACCCTCATTTGTGTCTTGTATGATAGATGCAAGA
ATTCCAACTGAGGAGATTTTATGAACCAGCTAAATGATTTGTATTCAGAA
CAGCATTAAAAGTCCCCATGACAAAGTGTACTTGAACAAAAGTACCCTGC
TTGTGACACATCCTGTACCAGTAATGTGTTTTCATTTTTCACATGTTGCA
TCTCATTTATTTTATTCAGGCACACATACTTAAATCTGCAAGATACCGCA
CGCTTCTGATACCTTTGAAATAATAAATCACTTTTTGCAGATGTTTTTGC
TGCCGCTAGCCTGGCATTCATTAATCAAACATTATCAGTCTCTACGGGTG
CCCAGTGCTTAACAGAAAAGACACTTTATTTTGAGTTCTGAATTTTACTC
ACTTGGAAAACTCTGGACCCTCTATTTTTACTGTTAATAATTTACAAATA
TTAACGCTCCCCTCCCGGAATCGGATTCTCCCCTAAAAAATTTATTTGGC
ACCTTACTTTTTTATTCCCACTCTCTATCCCCCCCCCCTGTATCCTCTTA
GNNNTTTTCNNNCCNTCCCTTNCGCTGTTTTTCATACCCCTCTCTCTCTC
TTTTTCCTCTCTCCCTTCCTTCATTCCGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_a24.b1 MSMg01no432_a24.b1 CHROMAT_FILE:
MSMg01no432_a24.b1 PHD_FILE: MSMg01no432_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:38 2005
         (283 letters)



>mm_chr3_118396599_118397281
          Length = 683

 Score =  532 bits (275), Expect = e-155
 Identities = 278/279 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaatgcaattttttttataaagcagatggtttgttgactacattgcatttaatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaatgcaattttttttataaagcagatggtttgttgactacattgcatttaatc 264

                                                                       
Query: 65  atgaaaataggaaaaattgacctcccaactttaaaataatgaaatgtgtatcttttaatt 124
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acgaaaataggaaaaattgacctcccaactttaaaataatgaaatgtgtatcttttaatt 324

                                                                       
Query: 125 ggagatgtcctttagaatacttactgtctcttttttgtgtagtcatatttcatagatatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggagatgtcctttagaatacttactgtctcttttttgtgtagtcatatttcatagatatt 384

                                                                       
Query: 185 aggtgggtatctatgttttggttgtcaacatatgtatttcactatgctgttagaaacaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggtgggtatctatgttttggttgtcaacatatgtatttcactatgctgttagaaacaat 444

                                                  
Query: 245 tgtgtgtgtctgtgtgtgcatttgtgtatgtgagtatgt 283
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtgtgtgtctgtgtgtgcatttgtgtatgtgagtatgt 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no432_a24.g1 MSMg01no432_a24.g1 CHROMAT_FILE:
MSMg01no432_a24.g1 PHD_FILE: MSMg01no432_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:39 2005
         (387 letters)



>mm_chr3_118536551_118537337
          Length = 787

 Score =  733 bits (379), Expect = 0.0
 Identities = 385/387 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctttatacataaaacatatgtgcagttttaatagtggtatatgacacaaaatttgaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 atctttatacataaaacatatgtgcagttttaatagtggtatatgacacaaaatttgaac 528

                                                                       
Query: 61  atttaaggaatgttacagcacattaagtttaaccctcatttgtgtcttgtatgatagatg 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 acttaaggaatgttacagcacattaagtttaaccctcatttgtgtcttgtatgatagatg 468

                                                                       
Query: 121 caagaattccaactgaggagattttatgaaccagctaaatgatttgtattcagaacagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 caagaattccaactgaggagattttatgaaccagctaaatgatttgtattcagaacagca 408

                                                                       
Query: 181 ttaaaagtccccatgacaaagtgtacttgaacaaaagtaccctgcttgtgacacatcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ttaaaagtccccatgacaaagtgtacttgaacaaaagtaccctgcttgtgacacatcctg 348

                                                                       
Query: 241 taccagtaatgtgttttcatttttcacatgttgcatctcatttattttattcaggcacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 taccagtaatgtgttttcatttttcacatgttgcatctcatttattttattcaggcacac 288

                                                                       
Query: 301 atacttaaatctgcaagataccgcacgcttctgatacctttgaaataataaatcactttt 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 287 atacttaaatctgcaagataccacacgcttctgatacctttgaaataataaatcactttt 228

                                      
Query: 361 tgcagatgtttttgctgccgctagcct 387
           |||||||||||||||||||||||||||
Sbjct: 227 tgcagatgtttttgctgccgctagcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |