MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-432N13
Chromosome	3 (Build37)
Map Location	146,119,153 - 146,119,614
singlet/doublet	singlet
Overlap gene	Ctbs
Upstream gene	Col24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip
Downstream gene	Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Col24a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71355 MGI:1918605
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2410019A14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229937 MGI:1916996
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cyr61 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16007 MGI:88613
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ddah1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69219 MGI:1916469
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040331 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040331
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 304 ESTs, 6 Proteins

name	Bcl10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12042 MGI:1337994
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2410004B18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66421 MGI:1913671
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Syde2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214804 MGI:3036264
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 28 ESTs, 2 Proteins

name	Wdr63 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242253 MGI:3045269
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mcoln3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:171166 MGI:1890500
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mcoln2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68279 MGI:1915529
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Edg7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:65086 MGI:1929469
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ssx2ip (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:99167 MGI:2139150
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ctbs (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74245 MGI:1921495
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Spata1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70951 MGI:1918201
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gng5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14707 MGI:109164
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bxdc5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70285 MGI:1917535
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100040473 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040473
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Dnase2b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56629 MGI:1913283
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Uox (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22262 MGI:98907
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930503B20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75015 MGI:1922264
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm1652 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381481 MGI:2686498
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC670100 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:670100
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 13 Proteins pseudo : _no_value

name	Prkacb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18749 MGI:97594
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040540 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040540
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 1364 ESTs, 5 Proteins

name	Ttll7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70892 MGI:1918142
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 116 ESTs, 5 Proteins

name	Ppia-ps3_1528.1 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:606715
definition	note : peptidylprolyl isomerase A pseudogene 3_1528.1 pseudo : _no_value

name	Col24a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116326000 GeneID:71355 MGI:1918605
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : procollagen, type XXIV, alpha 1 transcript_id : NM_027770.2

name	2410019A14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487365 GeneID:229937 MGI:1916996
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2410019A14 gene transcript_id : NM_001081094.1

name	Cyr61 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753593 GeneID:16007 MGI:88613
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cysteine rich protein 61 transcript_id : NM_010516.1

name	Ddah1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802157 GeneID:69219 MGI:1916469
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dimethylarginine dimethylaminohydrolase 1 transcript_id : NM_026993.2

name	LOC100040331 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251988 GeneID:100040331
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 304 ESTs, 6 Proteins product : similar to ribosomal protein L36a transcript_id : XM_001475021.1

name	Bcl10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753165 GeneID:12042 MGI:1337994
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : B-cell leukemia/lymphoma 10 transcript_id : NM_009740.1

name	2410004B18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372155 GeneID:66421 MGI:1913671
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2410004B18 gene transcript_id : NM_025555.2

name	Syde2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149251984 GeneID:214804 MGI:3036264
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 28 ESTs, 2 Proteins product : synapse defective 1, Rho GTPase, homolog 2 (C. elegans) transcript_id : XM_001004384.2

name	Wdr63 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142374626 GeneID:242253 MGI:3045269
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeat domain 63 transcript_id : NM_172864.2

name	Mcoln3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19527069 GeneID:171166 MGI:1890500
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mucolipin 3 transcript_id : NM_134160.1

name	Mcoln2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:91754181 GeneID:68279 MGI:1915529
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mucolipin 2 transcript_id : NM_026656.4

name	Mcoln2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:91754183 GeneID:68279 MGI:1915529
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mucolipin 2 transcript_id : NM_001005846.2

name	Edg7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352989 GeneID:65086 MGI:1929469
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor 7 transcript_id : NM_022983.3

name	Ssx2ip (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129983 GeneID:99167 MGI:2139150
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : synovial sarcoma, X breakpoint 2 interacting protein transcript_id : NM_138744.2

name	Ctbs (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142373893 GeneID:74245 MGI:1921495
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chitobiase, di-N-acetyl- transcript_id : NM_028836.2

name	Spata1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369430 GeneID:70951 MGI:1918201
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : spermatogenesis associated 1 transcript_id : NM_027617.2

name	Gng5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84579905 GeneID:14707 MGI:109164
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : guanine nucleotide binding protein (G protein), gamma 5 subunit transcript_id : NM_010318.2

name	Bxdc5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144922718 GeneID:70285 MGI:1917535
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : brix domain containing 5 transcript_id : NM_027371.2

name	Bxdc5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144922726 GeneID:70285 MGI:1917535
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : brix domain containing 5 transcript_id : NM_027332.2

name	Dnase2b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142382507 GeneID:56629 MGI:1913283
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : deoxyribonuclease II beta transcript_id : NM_019957.3

name	Uox (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142363454 GeneID:22262 MGI:98907
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : urate oxidase transcript_id : NM_009474.4

name	4930503B20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142379895 GeneID:75015 MGI:1922264
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930503B20 gene transcript_id : NM_029144.3

name	Gm1652 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94369964 GeneID:381481 MGI:2686498
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : gene model 1652, (NCBI) transcript_id : XM_358594.5

name	Prkacb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328443 GeneID:18749 MGI:97594
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase, cAMP dependent, catalytic, beta transcript_id : NM_011100.3

name	LOC100040540 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251992 GeneID:100040540
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 1364 ESTs, 5 Proteins product : similar to ribosomal protein L11 transcript_id : XM_001475408.1

name	Ttll7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149251994 GeneID:70892 MGI:1918142
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 116 ESTs, 5 Proteins product : tubulin tyrosine ligase-like family, member 7, transcript variant 2 transcript_id : XM_001005473.2

name	Col24a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116326001 CCDS:CCDS17892.1 GeneID:71355 MGI:1918605
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005581 - collagen [Evidence IEA]; GO:0005737 - cytoplasm [Evidence IEA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0005201 - extracellular matrix structural constituent [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0006817 - phosphate transport [Evidence IEA] codon_start : 1 note : collagen, type XXIV, alpha 1 product : procollagen, type XXIV, alpha 1 protein_id : NP_082046.2

name	2410019A14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487366 GeneID:229937 MGI:1916996
definition	codon_start : 1 product : hypothetical protein LOC229937 protein_id : NP_001074563.1

name	Cyr61 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753594 CCDS:CCDS17895.1 GeneID:16007 MGI:88613
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0019838 - growth factor binding [Evidence IEA]; GO:0008201 - heparin binding [Evidence IEA]; GO:0005520 - insulin-like growth factor binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0006935 - chemotaxis [Evidence IEA]; GO:0001569 - patterning of blood vessels [Evidence IMP]; GO:0001558 - regulation of cell growth [Evidence IEA] codon_start : 1 note : insulin-like growth factor binding protein 10; intermediate early product : cysteine rich protein 61 protein_id : NP_034646.1

name	Ddah1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38371755 CCDS:CCDS17896.1 GeneID:69219 MGI:1916469
definition	GO_function : GO:0016403 - dimethylargininase activity [Evidence ISS] [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence ISS] [Evidence IEA] GO_process : GO:0006809 - nitric oxide biosynthesis [Evidence ISS]; GO:0017014 - protein amino acid nitrosylation [Evidence ISS] codon_start : 1 product : dimethylarginine dimethylaminohydrolase 1 protein_id : NP_081269.1

name	LOC100040331 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251989 GeneID:100040331
definition	codon_start : 1 product : similar to ribosomal protein L36a protein_id : XP_001475071.1

name	Bcl10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753166 CCDS:CCDS17897.1 GeneID:12042 MGI:1337994
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA]; GO:0045121 - lipid raft [Evidence IDA] GO_function : GO:0008656 - caspase activator activity [Evidence ISS]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IMP] [Evidence IDA]; GO:0006919 - caspase activation [Evidence ISS]; GO:0007049 - cell cycle [Evidence IEA]; GO:0006968 - cellular defense response [Evidence IMP]; GO:0007249 - I-kappaB kinase/NF-kappaB cascade [Evidence IMP] [Evidence ISS]; GO:0016064 - immunoglobulin mediated immune response [Evidence IMP]; GO:0045786 - negative regulation of progression through cell cycle [Evidence IEA]; GO:0042981 - regulation of apoptosis [Evidence IEA] codon_start : 1 function : activates NF-kappaB and induces apoptosis product : B-cell leukemia/lymphoma 10 protein_id : NP_033870.1

name	2410004B18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384984 CCDS:CCDS17898.1 GeneID:66421 MGI:1913671
definition	codon_start : 1 product : hypothetical protein LOC66421 protein_id : NP_079831.1

name	Syde2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149251985 GeneID:214804 MGI:3036264
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001004384.2

name	Wdr63 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370310 CCDS:CCDS17899.1 GeneID:242253 MGI:3045269
definition	codon_start : 1 product : WD repeat domain 63 protein_id : NP_766452.1

name	Mcoln3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527070 CCDS:CCDS17900.1 GeneID:171166 MGI:1890500
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA] GO_process : GO:0042491 - auditory receptor cell differentiation [Evidence IMP]; GO:0007626 - locomotory behavior [Evidence IMP]; GO:0007605 - sensory perception of sound [Evidence IMP]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : varitint-waddler product : mucolipin 3 protein_id : NP_598921.1

name	Mcoln2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21389327 GeneID:68279 MGI:1915529
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; mucolipidin 2 product : mucolipin 2 isoform 1 protein_id : NP_080932.2

name	Mcoln2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:54292128 GeneID:68279 MGI:1915529
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; mucolipidin 2 product : mucolipin 2 isoform 2 protein_id : NP_001005846.1

name	Edg7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12667796 CCDS:CCDS17901.1 GeneID:65086 MGI:1929469
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0001619 - lysosphingolipid and lysophosphatidic acid receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor 7 protein_id : NP_075359.1

name	Ssx2ip (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20270273 GeneID:99167 MGI:2139150
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007155 - cell adhesion [Evidence IEA] codon_start : 1 note : afadin DIL domain-interacting protein product : synovial sarcoma, X breakpoint 2 interacting protein protein_id : NP_620083.1

name	Ctbs (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27229204 CCDS:CCDS17902.1 GeneID:74245 MGI:1921495
definition	GO_component : GO:0005764 - lysosome [Evidence IEA] GO_function : GO:0043169 - cation binding [Evidence IEA]; GO:0004568 - chitinase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0006032 - chitin catabolism [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : di-N-acetylchitobiase product : chitobiase, di-N-acetyl- protein_id : NP_083112.1

name	Spata1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21311949 GeneID:70951 MGI:1918201
definition	codon_start : 1 product : spermatogenesis associated 1 protein_id : NP_081893.1

name	Gng5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84579906 CCDS:CCDS17903.1 GeneID:14707 MGI:109164
definition	GO_component : GO:0005834 - heterotrimeric G-protein complex [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005083 - small GTPase regulator activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence ISS] codon_start : 1 product : guanine nucleotide binding protein (G protein), gamma 5 subunit protein_id : NP_034448.2

name	Bxdc5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312560 GeneID:70285 MGI:1917535
definition	GO_component : GO:0005730 - nucleolus [Evidence ISS]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003723 - RNA binding [Evidence IEA]; GO:0019843 - rRNA binding [Evidence IEA] GO_process : GO:0007046 - ribosome biogenesis [Evidence IEA]; GO:0006364 - rRNA processing [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 2 is encoded by transcript variant 2; RNA processing factor 1 product : RNA processing factor 1 isoform 2 protein_id : NP_081647.1

name	Bxdc5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31324545 GeneID:70285 MGI:1917535
definition	GO_component : GO:0005730 - nucleolus [Evidence ISS]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003723 - RNA binding [Evidence IEA]; GO:0019843 - rRNA binding [Evidence IEA] GO_process : GO:0007046 - ribosome biogenesis [Evidence IEA]; GO:0006364 - rRNA processing [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; RNA processing factor 1 product : RNA processing factor 1 isoform 1 protein_id : NP_081608.1

name	Dnase2b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542566 CCDS:CCDS17904.1 GeneID:56629 MGI:1913283
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005576 - extracellular region [Evidence IDA]; GO:0005764 - lysosome [Evidence IEA] GO_function : GO:0004530 - deoxyribonuclease I activity [Evidence IEA]; GO:0004520 - endodeoxyribonuclease activity [Evidence IDA]; GO:0004519 - endonuclease activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004518 - nuclease activity [Evidence IEA] codon_start : 1 exception : mismatches in translation note : deoxyribonuclease DLAD product : DNase2 like acid DNase protein_id : NP_064341.2

name	Uox (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678509 CCDS:CCDS17905.1 GeneID:22262 MGI:98907
definition	EC_number : 1.7.3.3 GO_component : GO:0005739 - mitochondrion [Evidence IDA]; GO:0005777 - peroxisome [Evidence TAS] GO_function : GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0004846 - urate oxidase activity [Evidence TAS] GO_process : GO:0006144 - purine base metabolism [Evidence TAS] codon_start : 1 note : uricase product : urate oxidase protein_id : NP_033500.1

name	4930503B20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126722682 GeneID:75015 MGI:1922264
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0031072 - heat shock protein binding [Evidence IEA] GO_process : GO:0006457 - protein folding [Evidence IEA] codon_start : 1 product : RIKEN cDNA 4930503B20 protein_id : NP_083420.2

name	Gm1652 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94369965 GeneID:381481 MGI:2686498
definition	codon_start : 1 product : hypothetical protein protein_id : XP_358594.5

name	Prkacb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755076 CCDS:CCDS17906.1 GeneID:18749 MGI:97594
definition	GO_component : GO:0005952 - cAMP-dependent protein kinase complex [Evidence TAS]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA] [Evidence IDA]; GO:0004691 - cAMP-dependent protein kinase activity [Evidence IDA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IDA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007188 - G-protein signaling, coupled to cAMP nucleotide second messenger [Evidence TAS]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] [Evidence IDA] codon_start : 1 note : cAMP-dependent protein kinase C beta product : protein kinase, cAMP dependent, catalytic, beta protein_id : NP_035230.1

name	LOC100040540 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251993 GeneID:100040540
definition	codon_start : 1 product : similar to ribosomal protein L11 protein_id : XP_001475458.1

name	Ttll7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149251995 GeneID:70892 MGI:1918142
definition	codon_start : 1 product : tubulin tyrosine ligase-like family, member 7 isoform 2 protein_id : XP_001005473.2

name	LOC100040473 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040473
definition	number : 1 pseudo : _no_value

name	LOC670100 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149251987 GeneID:670100
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 13 Proteins product : similar to Ac2-008 pseudo : _no_value transcript_id : XR_031690.1

clone name	MSMg01-337E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-096I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-165F10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-056M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-352C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-275E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-198J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-188F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422G01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-045G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536A23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-084B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-155N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-274I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-189J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-303O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-104I08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-364C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269G01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-076C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-187H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-352N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024L13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274D18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055G22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249J01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177F01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-143A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014K04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-338O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-250G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070L15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-013L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-044C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293C08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076D14
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-432N13.T7 (MSMg01no432_n13.b1)	MSMg01-432N13.TJ (MSMg01no432_n13.g1)
ACC	AG524768	AG524769
length	639	775
length of high quality (start - end)	90 (72 - 161)	461 (68 - 528)
definition	CHROMAT_FILE: MSMg01no432_n13.b1 PHD_FILE: MSMg01no432_n13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:44 2005	CHROMAT_FILE: MSMg01no432_n13.g1 PHD_FILE: MSMg01no432_n13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:44 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CCAATTTTCTCATAATTGGGCGCTATACGACTCCTATTCGAGAGGATCCG GGAATCCAACCTTCCACAACGATGTATCTACACATTAGGATTGAAGCACA GCGATTTCAATTTTTTTTATTCAGTAGAAATGCAATTAATAGAAGTCAAA CCATATTAGTGTGATCATCATTGNCACTTAGCACCTTCCTGGTGACGGGC AGCCATTCCTCCGGATAAGGGCTAAAACGTGGGCAAGAAAGCCGGGGCAT CTTCTCCAAAAAATTTCCCCCCCCCAGGCCCCCAAAAAAACCCAAACCCC TTTTCTTATTCCAAAAAATTTTTTTTTTTGGGGGGCCTCAAAAAAACCCC CCCCACACTTCTCCGAGAAAATGTTTTTTTTTTCTTCACCCTCAAATATT TTGGTGTGGGCTCTCTTTTTTTTCTTGCCCCTCGGTTCGGTCTTTATACC ATTATACCCTTACCTTCCTCCTCTCTTCTATAAAATTTTCTTCTTCTATT CTCTCCTCTATAACCCTTTATCTTTTGCTTCATTTTTCACCACAATGCAT NCTCTTATATTCCTCCTTTACCTCTTTTATCTCTCTTTTCTTTTCTATTA TTCTATCCTTCCTCTAANNCATATTCCATCTTTTTTATG	TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXCACTGAACACTGCTAATCACTTGCTGTCATCCC AGTCAAAGCCACGCATCTCCTTCCCACTGATATGTGCATCCTTGTGTCAT ATAATTTGACCAGTGAGTCTCATGTGACAACCAGCTCTCTCAGAATCACC CAACGCACATGCTAAAACTGCATGTGCTCAGCTCTAGCCCACAATCAGTG AACCAATGTCAGGAAATTCTAAATAACACCGCACGTGATCCCAGGGCAAG CTTCAGAACCATTGGTTTATAGAGCTTACGGTGCTCTACCTTGGATGGAC ATTACATGTATATAGAGTAGACACTAAGAATATATTTATTATACACACTT TATAGAAGGGTGATCTTTTGCATTTATAAATTCTACAAAGTACACATAAA AATGTTTGCTAATTTTCTATACTGTGGATATTTGTAAAATTTTCTATGTG TGGCTATTATTCTTAAATTTATATCCTCAACAGTCCATATAGTANCTATG TATATAACATTGTATTAGGTATTATTAGCAATAAAAAGATTTTTATTAAT TTTGGTCCCCTTTTTTTTCACTTTTTACTACCTATATATACTGCATTGTC CTTGTTTTTCTTCATTCTTTTCCCACCTTTATTCCCCCCTTTTCACTCTC TTTTCCTTCTCCCCCTTTTTCTTCCGATTTTCTTTTTTCTTTTTATTTTT CCTTCCTCTTTACCTTCTACTCCTG
quality values	Open. Hide. 8 8 8 8 8 6 6 6 6 6 8 6 8 10 11 10 15 12 9 10 10 23 23 31 36 36 31 31 39 23 21 10 9 9 9 9 10 12 11 11 11 11 9 11 11 11 17 15 10 12 10 21 10 12 10 22 8 8 8 8 9 10 10 10 10 9 10 10 10 11 11 10 25 24 37 47 47 53 53 53 57 57 50 50 48 50 47 25 25 18 22 27 28 36 39 39 43 43 33 33 33 31 31 31 30 23 32 27 25 25 31 37 37 47 59 47 41 39 37 24 20 12 10 10 17 22 32 25 25 30 37 37 32 29 29 20 13 13 11 14 10 13 25 25 32 37 17 14 15 19 16 15 32 28 28 21 21 21 19 19 9 9 10 15 15 19 20 18 18 25 12 16 3 0 3 17 18 17 17 12 12 11 18 11 10 10 10 10 11 18 19 12 11 10 13 13 10 15 18 21 10 10 10 9 10 10 12 12 10 10 10 9 9 9 9 9 9 11 10 10 10 9 10 10 21 15 10 9 9 9 9 10 10 6 6 8 8 11 12 12 11 11 8 10 11 14 10 9 8 8 10 8 10 8 8 6 6 6 10 13 13 11 11 8 8 8 8 8 8 9 11 13 9 8 8 7 9 9 9 16 23 16 12 10 10 11 10 14 11 12 10 10 10 10 10 12 19 12 14 14 24 15 15 6 6 8 6 8 8 8 8 10 10 11 18 17 21 10 10 8 7 8 8 9 9 11 13 8 8 8 8 8 8 8 8 6 6 6 8 8 8 10 25 8 8 8 8 8 8 13 16 12 7 8 6 6 8 6 8 8 10 10 10 8 8 8 8 8 8 8 8 8 8 8 8 12 10 9 9 9 12 12 8 7 6 8 8 7 6 8 8 8 8 8 8 8 6 7 10 10 10 8 6 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 6 6 8 8 10 8 8 8 8 8 8 9 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 9 12 11 9 11 11 9 9 8 11 8 8 8 8 8 8 8 10 10 8 8 8 8 8 8 8 8 6 6 8 12 8 8 8 8 12 8 8 8 8 8 8 6 6 8 8 10 8 8 8 10 10 10 8 8 6 6 8 8 10 13 10 9 8 8 8 8 10 8 9 6 8 6 6 8 8 9 11 10 9 9 9 8 8 8 10 8 8 9 9 9 9 3 0 3 9 8 8 8 8 8 8 8 8 8 13 13 10 10 10 9 9 10 8 8 8 9 9 12 18 11 9 8 10 8 8 8 9 10 12 15 22 18 18 13 13 8 8 6 6 8 8 8 8 8 19 8 8 8 8 8 8 10 8 9 8 8 8 8 3 0 0 3 8 6 7 7 10 8 9 9 9 12 9 10 10 10 9 8 8 8 8	Open. Hide. 6 8 19 19 8 8 8 23 27 37 41 44 39 39 39 39 39 39 39 41 41 25 27 11 6 6 6 6 10 8 10 10 11 18 21 30 37 43 44 39 36 33 33 33 36 33 50 50 50 41 28 24 13 11 11 11 23 19 19 19 27 19 28 28 28 36 36 38 38 36 36 57 42 37 37 47 47 47 57 57 57 57 57 57 68 68 68 68 68 68 68 68 51 51 50 50 50 51 68 68 68 50 50 50 51 51 51 68 68 68 50 50 51 51 51 51 50 68 68 68 68 68 68 68 68 68 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 51 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 44 44 35 35 28 38 32 34 34 24 24 44 44 59 57 68 68 68 68 68 68 68 59 59 68 68 68 68 68 57 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 59 59 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 68 68 68 59 68 59 59 57 57 57 59 57 57 57 54 54 68 68 68 57 57 57 57 57 59 59 68 68 59 59 59 57 57 59 54 48 48 39 43 47 48 48 43 43 43 43 48 48 47 57 48 57 57 43 43 40 40 40 41 40 39 39 39 41 41 41 43 43 41 41 46 47 46 36 34 28 28 22 31 28 32 28 30 26 27 24 25 30 25 24 18 18 18 30 34 41 41 37 39 32 33 31 30 25 30 32 23 32 31 40 39 34 37 32 24 25 28 28 32 39 39 43 36 39 39 41 41 24 24 10 13 8 8 8 7 12 9 12 12 26 28 34 23 16 16 3 0 3 9 9 9 10 10 17 18 15 21 19 25 12 11 13 21 23 25 23 11 11 11 16 12 15 15 10 10 15 16 11 11 9 9 9 10 8 8 8 8 8 11 9 8 12 12 12 15 10 10 9 10 9 11 11 11 10 10 9 9 10 12 9 9 8 7 8 8 15 15 13 10 7 7 8 10 18 10 9 9 9 9 11 9 10 8 8 8 8 10 9 10 8 8 8 8 8 8 8 7 7 8 8 10 8 8 8 10 11 12 23 12 15 15 13 13 10 8 8 8 8 8 10 12 9 12 13 15 10 10 9 8 8 8 8 8 6 7 7 8 8 8 10 6 9 9 9 10 11 14 10 11 10 12 10 12 15 14 10 10 13 15 9 9 9 10 10 13 9 11 8 10 13 15 13 10 10 8 10 7 9 8 8 8 8 11 11 15 15 19 19 24 24 20 15 13 9 9 9 10 11 18 14 10 8 8 8 8 9 11 10 12 9 7 11 6 8 7 8 11 13 10 10 7 6 8 8 9 9 9

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no432_n13.g1 MSMg01no432_n13.g1 CHROMAT_FILE:
MSMg01no432_n13.g1 PHD_FILE: MSMg01no432_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:44 2005
         (461 letters)



>mm_chr3_146118953_146119814
          Length = 862

 Score =  862 bits (446), Expect = 0.0
 Identities = 458/462 (99%), Gaps = 1/462 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactgaacactgctaatcacttgctgtcatcccagtcaaagccacgcatctccttcccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 cactgaacactgctaatcacttgctgtcatcccagtcaaagccacgcatctccttcccac 603

                                                                       
Query: 61  tgatatgtgcatccttgtgtcatataatttgaccagtgagtctcatgtgacaaccagctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tgatatgtgcatccttgtgtcatataatttgaccagtgagtctcatgtgacaaccagctc 543

                                                                       
Query: 121 tctcagaatcacccaacgcacatgctaaaactgcatgt-gctcagctctagcccacaatc 179
           ||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||
Sbjct: 542 tctcagaatcacccaacgcacatgctaaaactgcaggtccctcagctctagcccacaatc 483

                                                                       
Query: 180 agtgaaccaatgtcaggaaattctaaataacaccgcacgtgatcccagggcaagcttcag 239
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 482 agtgaaccaatgtcaggaaattctaaataacaccgtacgtgatcccagggcaagcttcag 423

                                                                       
Query: 240 aaccattggtttatagagcttacggtgctctaccttggatggacattacatgtatataga 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aaccattggtttatagagcttacggtgctctaccttggatggacattacatgtatataga 363

                                                                       
Query: 300 gtagacactaagaatatatttattatacacactttatagaagggtgatcttttgcattta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gtagacactaagaatatatttattatacacactttatagaagggtgatcttttgcattta 303

                                                                       
Query: 360 taaattctacaaagtacacataaaaatgtttgctaattttctatactgtggatatttgta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 taaattctacaaagtacacataaaaatgtttgctaattttctatactgtggatatttgta 243

                                                     
Query: 420 aaattttctatgtgtggctattattcttaaatttatatcctc 461
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aaattttctatgtgtggctattattcttaaatttatatcctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 862
Length adjustment: 10
Effective length of query: 451
Effective length of database: 852
Effective search space:   384252
Effective search space used:   384252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information