Query= MSMg01no433_a08.b1 MSMg01no433_a08.b1 CHROMAT_FILE:
MSMg01no433_a08.b1 PHD_FILE: MSMg01no433_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:59 2005
(282 letters)
>mm_chr3_81587337_81588016
Length = 680
Score = 493 bits (255), Expect = e-144
Identities = 273/279 (97%), Gaps = 2/279 (0%)
Strand = Plus / Minus
Query: 4 ggaattcctaatgtttctaattgacagagctgttattctacctctacagtgcagtttaaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ggaattcctaatgtttctaattgacagagctgttattctacctctacagtgcagtttaaa 421
Query: 64 ttataataacataaacagattatatctatctacctgaaatgccaagtgaaatgtctcatg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ttataataacataaacagattatatctatctacctgaaatgccaagtgaaatgtctcatg 361
Query: 124 aactacaggcacttatctctttcttcacaaggaataaatatagtcgtccataggnataga 183
|||||||||||||||||||||| |||||||||||||||||||||||| |||||| | |||
Sbjct: 360 aactacaggcacttatctcttttttcacaaggaataaatatagtcgttcatagg-acaga 302
Query: 184 taatgacataagtttgaggttgacagaaaaaaggagagtttatttgaggcagatgtttcg 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 301 taatgacataagtttgaggttgacagaaaaaaggagagtttatttgaggcagatgttt-g 243
Query: 244 ctatggagaaagtcgctgaagagtcatcaagggaacgct 282
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 242 ctatggagaaagtcgctggagagtcatcaagggaacgct 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 680
Length adjustment: 9
Effective length of query: 273
Effective length of database: 671
Effective search space: 183183
Effective search space used: 183183
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no433_a08.g1 MSMg01no433_a08.g1 CHROMAT_FILE:
MSMg01no433_a08.g1 PHD_FILE: MSMg01no433_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:59 2005
(373 letters)
>mm_chr3_81534493_81535266
Length = 774
Score = 659 bits (341), Expect = 0.0
Identities = 370/389 (95%), Gaps = 16/389 (4%)
Strand = Plus / Plus
Query: 1 cacagtgtagctttctgaaagaccctgaaaaagcagagggaaagctaaaaagcaacttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 cacagtgtagctttctgaaagaccctgaaaaagcagagggaaagctaaaaagcaacttaa 245
Query: 61 cttttcataaattcaggggg---------------aaaacaaaacaaaacaaaacaaaac 105
|||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 246 cttttcataaattcagggggaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaac 305
Query: 106 gaaaataagcaaacaaaacaccaaacaaacaaaaataaaacaaaacaaaaaacgtttcca 165
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aaaaataagcaaacaaaacaccaaacaaacaaaaataaaacaaaacaaaaaacgtttcca 365
Query: 166 tgggatactccattgacctcctattgttacctgctctctctaacaaagaatctaggtgtt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgggatactccattgacctcctattgttacctgctctctctaacaaagaatctaggtgtt 425
Query: 226 tcatcagattctctttctcatgggtaagaattggtaaagaaagtcacagacaatggcaaa 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tcatcagattctctttctcatgggtaagaattggtaaagaaagtcacagacaatggcaaa 485
Query: 286 aggggctgagagattagtcactgcatttttt-gggcatcagggtagtaagctcgagggaa 344
|| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 486 agaggctgaaagattagtcactgcatttttttgggcatcagggtagtaagctcgagggaa 545
Query: 345 ggatttctgtgggtttctttttatttttt 373
|||||||||||||||||||||||||||||
Sbjct: 546 ggatttctgtgggtttctttttatttttt 574
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 774
Length adjustment: 9
Effective length of query: 364
Effective length of database: 765
Effective search space: 278460
Effective search space used: 278460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
