Query= MSMg01no433_c12.b1 MSMg01no433_c12.b1 CHROMAT_FILE:
MSMg01no433_c12.b1 PHD_FILE: MSMg01no433_c12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:10 2005
(242 letters)
>mm_chr3_29037265_29037907
Length = 643
Score = 445 bits (230), Expect = e-129
Identities = 239/242 (98%), Gaps = 1/242 (0%)
Strand = Plus / Plus
Query: 1 atacagagcatttcaaaggaaaaaaaatcacacttaaaat-caggacattttataaggaa 59
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 201 atacagagcatttcaaaggaaaaaaaatcatacttaaaatacaggacattttataaggaa 260
Query: 60 aaaaaatcactttcaggttgcttggtttttctttcagtttttagtagtcacagaataaag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaatcactttcaggttgcttggtttttctttcagtttttagtagtcacagaataaag 320
Query: 120 aagacacaccagaaattaattatattcagtggttgtcctttgagtgacatctctctttat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 aagacacaccagaaattaattatattcagtggttgtcctttgagtgacatctctcttcat 380
Query: 180 tctttgacactcactcacttaaaacaaaaacaaaatctcccaaaaccctcaaaaccaaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctttgacactcactcacttaaaacaaaaacaaaatctcccaaaaccctcaaaaccaaaa 440
Query: 240 tc 241
||
Sbjct: 441 tc 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 643
Length adjustment: 9
Effective length of query: 233
Effective length of database: 634
Effective search space: 147722
Effective search space used: 147722
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no433_c12.g1 MSMg01no433_c12.g1 CHROMAT_FILE:
MSMg01no433_c12.g1 PHD_FILE: MSMg01no433_c12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:10 2005
(428 letters)
>mm_chr3_29202228_29203053
Length = 826
Score = 785 bits (406), Expect = 0.0
Identities = 422/428 (98%), Gaps = 2/428 (0%)
Strand = Plus / Minus
Query: 1 ccaaatacatattaacttgaaaagccagacagaaaatgatgttgctgccaatgtagacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ccaaatacatattaacttgaaaagccagacagaaaatgatgttgctgccaatgtagacta 567
Query: 61 ctagaacagaatcaccccaatgaggcatttactataaatgcagatacccagcccatgtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctagaacagaatcaccccaatgaggcatttactataaatgcagatacccagcccatgtgg 507
Query: 121 actcacccactcagcattggcctactgagcctagacacatcagcattagcagcaaatcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 actcacccactcagcattggcctactgagcctagacacatcagcattagcagcaaatcca 447
Query: 181 tactatagaaacatagaaacataacttaacatgggtcacagatctgagagtctctataat 240
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 446 tactatagaaacatagaaacataacttaacatgggtcacagatctgagag--tctataat 389
Query: 241 tttctaatgccccaaatggctatgagttttaaaacagaagacagagtactgggatattgc 300
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttacaaatgccccaaatggctatgagttttaaaacagaagacagagtactgggatattgc 329
Query: 301 ttgcaaagttcaagggactacaaattggagataattatcaaccagcaactaagcaggggt 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 328 ttgcaaagttcaagggactacaaattggagataattatcaacaagcaactaagcaggggt 269
Query: 361 taactgcaaaaaaagatgtttaactggataatttaacatattttttttgttccagaagct 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 268 taactgcaaaaaaagatgtttaactggataatttaacatattttttttgttccagaagtt 209
Query: 421 ggcaagaa 428
||||||||
Sbjct: 208 ggcaagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 826
Length adjustment: 9
Effective length of query: 419
Effective length of database: 817
Effective search space: 342323
Effective search space used: 342323
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
