BAC Information

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BAC

Clone NameMSMg01-433D23
Chromosome3 (Build37)
Map Location 43,132,554 - 43,132,960
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039204, LOC100039219, LOC677788
Downstream geneLOC100039264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433D23.T7 (MSMg01no433_d23.b1)MSMg01-433D23.TJ (MSMg01no433_d23.g1)
ACCAG525074AG525075
length815753
length of high quality
(start - end)
220 (40 - 259)406 (70 - 475)
definitionCHROMAT_FILE: MSMg01no433_d23.b1 PHD_FILE: MSMg01no433_d23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:17 2005CHROMAT_FILE: MSMg01no433_d23.g1 PHD_FILE: MSMg01no433_d23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTTATTCTCTGAGCCCCATTTTTTAATGCAGGTATTTGATTTGATTT
TCTGGAGTCCACCTTCTCGAGTTATATATATATATATATATATATATATA
TATATATATATGTGATATTAGTCCCCTATCTGATTCAGGACAGGTAAAGA
TCCTTTCCCAATCTGTTGGTTGCCTTTTTATCTTATTGATGGTGACTTTT
ACCTTACAGAAGCTTTGCCATTTTATGAGCTCCCATTTTTTGATTCTCAA
ACTTTTCCTCTCTGATTTTGTTAACTAGAATGCTGGCCCTGTGTCCTCTA
GTGAGTCTGGTTAAGGGTCCATACACCTTACTGATTCTCTCATAGAACCC
GCCCCCTGTCTGTCCGCCCCCCCCCATTAGCTTCCTCCTGTCTCCACCCG
GCCGATCTCGCCCCCTCGTCCCTGCCTACCTTCCTGTCCCTTTCCCCTTT
CTCCGCCTGTTCCTCGTTCCTCTCTTTCTCCTCCCCTCCTCTCCTCCCTT
TCTCTTTCTCTTCTCCCCTTCCTCCCATTCCCCTTTTTCTCTCCTTCTCT
CTTTCCGCGCCTTCCCCTTCCCCCCCTCCCCCCCTCCTTCCTTTCCCCCC
CCCCCCCCCCTTTCCTCCCGCTCCCCACCCCCTTCTTTCCCCCTCCTCCT
CCTTCTCTCCCCTTTTTTCTCCTTTCCTTCTCCCCTCGCCCCATTTCTTC
CCCCCCCTTTCCTTTTCCCCCGCACCCGCCCTTTTTTCCTCCCCCTACTC
CGTCGCGCTTCTTAC
ATAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTCCCTATCAGGTTTTTTTTTTTCAAAAAC
GTGGATCAAAAACACAGAAACAAATTTGTGCCCAAAGTATCAATTTCTAG
ACACATTAAAATATGCACATATTTTAAAATTATATTAAAATCACAAACAC
CAAGTGTGAAAATTTAACATCTGGATGCACAGTGATTTAAGTAAGTCTTT
TTTAAAAAAGAGTATTACCTAGGTGTTATTCAAGCATGCCTCAGGAGTAA
TCTACTCCCAAGTTCAGTTCTATCAAAAATAATATCAGCACACCTAAGGC
AAGATCTGCTGGTAAAAAATGACAAGCAATAATATAAGAGAAACCATGTT
CGACTTACTTGACATTCCAAGTGGATATTTGTTTTATAAACAGAAGTTTT
AAAAACAACCCAATTTTGAAAAATAAATCACTAGGTAATTATCACTGATT
TTCAGTANCAACAACCATATAATAATAAAATCCTATTTTCTTACTATTTC
CATTTAACAAATTTTTCACCATTTGTCCCATTTTAAACGAGATGATTTCC
AAAAAGAAAAGCCTATTTATTTTACCCCAAAAAGTTGTCCCTCCCCCCAG
GTTCTCCCCCAAAAATCTTTCTCCCTTCTTTTGTCTACAAAAAAAGGGGT
TCCCCTTCGCTATTCTCTTCTATTAGGCTACACATTTTTCCTTCTGAATA
AAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_d23.g1 MSMg01no433_d23.g1 CHROMAT_FILE:
MSMg01no433_d23.g1 PHD_FILE: MSMg01no433_d23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:17 2005
         (406 letters)



>mm_chr3_43132232_43133037
          Length = 806

 Score =  772 bits (399), Expect = 0.0
 Identities = 405/407 (99%), Gaps = 1/407 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttccctatcag-gtttttttttttcaaaaacgtggatcaaaaacacagaaacaaatttg 59
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tttccctatcagtttttttttttttcaaaaacgtggatcaaaaacacagaaacaaatttg 670

                                                                       
Query: 60  tgcccaaagtatcaatttctagacacattaaaatatgcacatattttaaaattatattaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tgcccaaagtatcaatttctagacacattaaaatatgcacatattttaaaattatattaa 610

                                                                       
Query: 120 aatcacaaacaccaagtgtgaaaatttaacatctggatgcacagtgatttaagtaagtct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aatcacaaacaccaagtgtgaaaatttaacatctggatgcacagtgatttaagtaagtct 550

                                                                       
Query: 180 tttttaaaaaagagtattacctaggtgttattcaagcatgcctcaggagtaatctactcc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tttttaaaaaagagtattacctaggtgttattcaagcatgcctcaggagtaatctactcc 490

                                                                       
Query: 240 caagttcagttctatcaaaaataatatcagcacacctaaggcaagatctgctggtaaaaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 caagttcagttctatcaaaaataatatcagcacacctaaggcaagatctgctggtaaaaa 430

                                                                       
Query: 300 atgacaagcaataatataagagaaaccatgttcgacttacttgacattccaagtggatat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 atgacaagcaataatataagagaaaccatgttcgacttacttgacattccaagtggatat 370

                                                          
Query: 360 ttgttttataaacagaagttttaaaaacaacccaattttgaaaaata 406
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ttgttttataaacagaagttttaaaaacaacccaattttgaaaaata 323


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)