BAC Information

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BAC

Clone NameMSMg01-433G03
Chromosome3 (Build37)
Map Location 132,909,220 - 132,909,717
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik
Downstream genePpa2, E130014J05Rik, EG620205, LOC100039168, LOC668862, LOC100039199, Cxxc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433G03.T7 (MSMg01no433_g03.b1)MSMg01-433G03.TJ (MSMg01no433_g03.g1)
ACCAG525178AG525179
length737771
length of high quality
(start - end)
498 (61 - 558)416 (68 - 483)
definitionCHROMAT_FILE: MSMg01no433_g03.b1 PHD_FILE: MSMg01no433_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:27 2005CHROMAT_FILE: MSMg01no433_g03.g1 PHD_FILE: MSMg01no433_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
ACATCTCCGGATGCAGTTTCCATCTTCGGTTGGCAGTCAACCCCTGGAAG
ACCCTCACAGTCCCTTATGATTTCTGAACCTCAGTTACTAAAATCTAAAG
GTTATTGCTGAAAATCTAGTCCGCCTGCTCTTTGCTGACATCAAGCATCA
TCTTCTTCTGTAGTCAGCCACTAAGGTGTTACAGAAAGGCACGCTGCAGA
TTACCGCTCATAAAGAAAATGCTCTTTAATGGGAAGGAAGGACACAACTT
TTAAAGCCTGGCTTCTCTGCACTCTGAGCTCACGATGCCTGCAGCCAGAT
GATCTGGAGTGAAGTCCGTCTTTCAACCTCAGCTCTGTATCTGTACAAGA
ACAATACTATTTGCCCCTAGGGCTGTCCACACTGTCCTCAAACTATGTCA
AAGAGTGTCTCTAATTTTGTATCTCTAATCCTAGCAGTAAAGCTGAGACA
GGATTTCTGCAAATTCAAGGGGCTGGGTTACAGAATAAGATCGGTCTCAA
AGAACCCCTTCAAAAAATCTCAAAGCAATAAAAGACTGGCAATGTACACA
TGTCACAGCCCACAGTCACTGCTCAATAAGTTATGGACAGTCTTAAGGCT
TTAAGCTGTTGGTTGAACTGACTTAACGAAAAAACGCAATGGCTCCGGGT
GGATTGAAAAAAATACTGGCTTCGAAAAATTTTAAAG
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCAC
CTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAAC
AACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATT
CAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTC
CATTGTTGGTGGGATTGTAATCTTGTACAACCACTCTGGAAATCAGTCTG
GCGGTTCCTCATAAAATTGGACATAGTACTACCAGAGGATCCAGCAATAC
CTCTCCTGGGCATATATCCGGAAGATGCCCCAACTGGTAAGAAGGACACA
TGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCGAGAAGCTGGAA
AGAACCTAGATGCCCCTCAACAGAGGAATGCATACAGAAAATGCGGTACA
TCTACACCATGGAGTACTACTTAGCTATTAAAAAGAACGAATTTATGACA
TTCTTACTCTTATGTATTGCACTTGTTACGTCTTCCTCCCGACGGGAGGT
AATACTTTCCTCCTAGTGAACTCATCCTAACATTGCTCTTCCTGTACCTT
CGTTACTTTTTCCCCTCTTCTCTCCGGATTACTCCCCTAATCCAACAACA
TCTTCTTTTGCCACATATTTTTGATGCCATTTGCTCATTTATCCCATCCC
TTTTCCTCCGTCATACTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_g03.b1 MSMg01no433_g03.b1 CHROMAT_FILE:
MSMg01no433_g03.b1 PHD_FILE: MSMg01no433_g03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:27 2005
         (498 letters)



>mm_chr3_132909113_132910010
          Length = 898

 Score =  940 bits (486), Expect = 0.0
 Identities = 495/498 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgcagtttccatcttcggttggcagtcaacccctggaagaccctcacagtcccttatga 60
           |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 atgcggtttccatctttggttggcagtcaacccctggaagaccctcacagtcccttatga 546

                                                                       
Query: 61  tttctgaacctcagttactaaaatctaaaggttattgctgaaaatctagtccgcctgctc 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 545 tttctgaacctcagttactaaaatctaaaggttatcgctgaaaatctagtccgcctgctc 486

                                                                       
Query: 121 tttgctgacatcaagcatcatcttcttctgtagtcagccactaaggtgttacagaaaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tttgctgacatcaagcatcatcttcttctgtagtcagccactaaggtgttacagaaaggc 426

                                                                       
Query: 181 acgctgcagattaccgctcataaagaaaatgctctttaatgggaaggaaggacacaactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 acgctgcagattaccgctcataaagaaaatgctctttaatgggaaggaaggacacaactt 366

                                                                       
Query: 241 ttaaagcctggcttctctgcactctgagctcacgatgcctgcagccagatgatctggagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ttaaagcctggcttctctgcactctgagctcacgatgcctgcagccagatgatctggagt 306

                                                                       
Query: 301 gaagtccgtctttcaacctcagctctgtatctgtacaagaacaatactatttgcccctag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gaagtccgtctttcaacctcagctctgtatctgtacaagaacaatactatttgcccctag 246

                                                                       
Query: 361 ggctgtccacactgtcctcaaactatgtcaaagagtgtctctaattttgtatctctaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggctgtccacactgtcctcaaactatgtcaaagagtgtctctaattttgtatctctaatc 186

                                                                       
Query: 421 ctagcagtaaagctgagacaggatttctgcaaattcaaggggctgggttacagaataaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ctagcagtaaagctgagacaggatttctgcaaattcaaggggctgggttacagaataaga 126

                             
Query: 481 tcggtctcaaagaacccc 498
           ||||||||||||||||||
Sbjct: 125 tcggtctcaaagaacccc 108


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)