BAC Information

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BAC

Clone NameMSMg01-433J07
Chromosome3 (Build37)
Map Location 48,056,317 - 48,056,557
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039426, LOC666202
Downstream geneLOC666208, 1700018B24Rik, LOC100039404, EG666230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433J07.T7 (MSMg01no433_j07.b1)MSMg01-433J07.TJ (MSMg01no433_j07.g1)
ACCAG525330AG525331
length758772
length of high quality
(start - end)
271 (38 - 308)242 (70 - 311)
definitionCHROMAT_FILE: MSMg01no433_j07.b1 PHD_FILE: MSMg01no433_j07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:42 2005CHROMAT_FILE: MSMg01no433_j07.g1 PHD_FILE: MSMg01no433_j07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAATTCCC
AATGTACACATTGTCTTAATTAGTATTTTACTGCTATGAACAGCACCATG
ACCAAAAGGTAAATCTTATAAGAACAAAATTTAATTGGAGCTGGCTTACA
GGTTTAGAGGGTCAGTCTGTTATCACCAAGGTTGGCATATGGCAGCATCC
AGGCAGGCATGGTGTGTTGGGGCCAGCCTGTGGCTCTCATGTCCGGGTTT
GAGCCTGGAAGGCATCTTGGAATCTGGAAGAAAAGAGGGAGTCTAGGTGG
GTAAAGATATTTTTGTTGTCAAGACTGAATTCTGATCAAGACTCAACTTT
AATGTAGGCAAACACGCTTTATAAAGAAGAGGGGAGGCCCATTCCCAGCC
ACACAAAGTTCCTTTGAAGTTGTCAGATCAGCCTTTTAGTGGGAACTTGC
GAAGATCACTGTACCATGTTAACTCATGAATACCATGGACAGCTTGTTCC
TTCTCTTGTCTGCGGCTTGCTCCGCCTTATCTTCTCATTCCGTTTGACAT
TCCTTTTTTTCTCTTGGGTCTCCAATCCTTCGTTATAGGGTCCCCCATCA
TTCCTTTTTTCTGCTTGCACCTTTTTCCCTTCCGCTCCCTTTTTCCCCTC
TTCTCCTTTTCCCCTTTTTTTTCTCTTCCTCTCTTTCCACACCTTTTCTC
CTTTCTTTCCTTTTTCCCCACCCCCCCTTTTTATCTTCCCTCCCCTCCCC
TTTCTTCC
ATTTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCACTATCCTGCTACATTGTGCATCTAGAAC
GTCTTCCAAAAGTTTTGGGGTTAAAGGATTGATCTTCAGCCTCACGACTA
GGAACTCTGAAAGAACTTATATGAGTTAGATCATAGTGGTGCTCAAAGAC
CAAGGGAATTTCTTATTAATGAGGATACGAGGATTCTGACCTCTTATGTC
TTCACTTTCCACACACCCTAAGGTATTTAGGTGTATTGGTTGATTTTATG
CGAATTTGACTTTTTTTAATACCCTGGGAATATAGAGCCTCTATTCTTAT
TACGCTTCCATCTCATCATGTTGCTACGTGAGCCTCCAGCTGACCTTCTT
AATCACTGTTTGATGCATTATGTTTTACCCTATTGTGTATCCTGCTGTCT
GTTACCTGCCAGTCCTGCCCTCCTTACTACCGCCGCTGCTCCTTCTGTTT
CCCGTTCTCTCTCCTTCCTATCCTTCCTTCTGCATTTTTTTTTTTTCTCT
ATCCCCTTCCCCTTTCTCCCTTTCTTTCTTCTCTCCCCCCTCCCCCTTTC
TTCCTTTTCTTTTCTTTCCCCTTTTTTTCTTTCTCCCCTTCTTTTTTATC
TCTTCCCTTCTTTTTCTCTTTCCTCTCTCCCCTTCCCCCTTCTCCCACCT
ACTCTTTTTTCCCTTCCTCTCTCTTTCTTTTCCCTCGCTATCTCCTTTCT
TTCTCTTCCTTCCCCTCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_j07.g1 MSMg01no433_j07.g1 CHROMAT_FILE:
MSMg01no433_j07.g1 PHD_FILE: MSMg01no433_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:43 2005
         (242 letters)



>mm_chr3_48056117_48056758
          Length = 642

 Score =  458 bits (237), Expect = e-133
 Identities = 240/241 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccactatcctgctacattgtgcatctagaacgtcttccaaaagttttggggttaaaggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccactatcctgctacattgtgcatctagaacgtcttccaaaagttttggggttaaaggat 260

                                                                       
Query: 61  tgatcttcagcctcacgactaggaactctgaaagaacttatatgagttagatcatagtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatcttcagcctcacgactaggaactctgaaagaacttatatgagttagatcatagtgg 320

                                                                       
Query: 121 tgctcaaagaccaagggaatttcttattaatgaggatacgaggattctgacctcttatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctcaaagaccaagggaatttcttattaatgaggatacgaggattctgacctcttatgt 380

                                                                       
Query: 181 cttcactttccacacaccctaaggtatttaggtgtattggttgattttatgcgaatttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 cttcactttccacacaccctaaggtatttaggtgtattggttgattttatgtgaatttga 440

            
Query: 241 c 241
           |
Sbjct: 441 c 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)