BAC Information

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BAC

Clone NameMSMg01-433M08
Chromosome3 (Build37)
Map Location 109,659,276 - 109,659,422
singlet/doubletsinglet
Overlap geneNtng1
Upstream geneFndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3
Downstream geneLOC100043181, LOC100043183, Prmt6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433M08.T7 (MSMg01no433_m08.b1)MSMg01-433M08.TJ (MSMg01no433_m08.g1)
ACCAG525476AG525477
length794773
length of high quality
(start - end)
39 (73 - 111)240 (69 - 308)
definitionCHROMAT_FILE: MSMg01no433_m08.b1 PHD_FILE: MSMg01no433_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:57 2005CHROMAT_FILE: MSMg01no433_m08.g1 PHD_FILE: MSMg01no433_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCANGAGGATGCGCNGG
AATCTCTCTCTTCCTCACAACTCTCTCTCTCTCTCTCTCTCTCACACACA
CACACACACAAGCATGCTCACATCACTTAAAGATATTGATGTTGGTATAA
GGAAACCCAATTTAAAATCCATCCTGCAGACCATGAGCATTTCCACCAAG
TCTTTTTTTTTTTTTTTTTTGGTAAGGCAAATGAAACAAGGCACATTTAT
TACTTAATCTAATATCTAGCATCTAACACTTAATAAAGGCCAGTAGTCAC
CAACCACTACTCCTGCTTTTTTTTTTTATNGACANTCATCCACACCCCAG
CTTCTAAGGATATTTTTGTTTTGTATTCAGCCCAAGCCGCGCATGTTCCC
CCCCCCCCTTATTTTATCAACTCCGCCCCTTTGTTTCTTTTTTTTTTTTT
TCCCCCCCCCTCCCTCCTTTTTTTTTTCCCCCCCCCCCCTTTTTTTTCTT
TTTCCCCTTTTTTTTCCCCCCCCCTCCTCCCTTTTTTTCCTTTCCTTTTT
CATTCTTCCATCTTCCCCCGCCCTCCTTTTTTCCCCCTCTCTCCCCTTTT
TTTCCTCCCCCCATCTTTTTTTTTCCCCATTTTCACCTTTCATTCCCCTT
TTTTTTTATTTTTCCCCCTTTCCTTTTATTTTTACCCTTCATTTTTTTCC
CCCCCCTTTTTTCCTCTTTCGCTCTTTCTCTTCTCTCCCCCTTCTTTTCC
TTCCCCCCCCTTCCTCATTTCTTTTTTTTCCCCCCTTTTTTCCT
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGCTGAGGACAGGGACAAGAACATAATAGAAT
GTTATAGCATGATATTTCCTCCATTTTTCGGCTAGCTCTTCCTCGATCAG
GCCAATAGCTAAAGGGTATTTACATACTAAGCTTACAGAAGTCAACATGG
CAGAGATCTAAAAAATAAATAACCAATCTGCAGAAGCAGATTAAGGTAGT
GCTTAAGCTGTAAATCCTTTGAAAATCAATGATAGACAGGTTTGCAGCTT
TCCGTCATGATTTAGGCAACATGGTAAGGATTCAGCGTACTTGGAATGCT
AGGAAAAAAAATGACCACTGATGGGATGGATGGTCTGACTAATCCATCAT
GTACGTGAGCAGATCTTCTCTCAGTCAGCCTGCTTCTCTTGTCAATACTT
CATCCTACAGCGTCCTCAATTCCAGCCTCTTATCTGCCAATCACCTCCTT
CCGCCTATTCCCTTCTTTTTTCCCATTGACTTTTTTTCTTGTTCCCCTCC
CCCCTGTCGTTCCCTATCCTAACCTGCTTCCCCTCTTTCCTCCGCTTCCT
CCCTTTTTTCCTCTTTCCTTTTCCTCTTTTCTTTTTTTCTTTTTTTCCCC
CCCCCCTTTTTCCTTTCCTTTCCCCTCCCACCTCTTTTCCCTTTCCCCTT
TTCCATTCCTTTCCTCCTATTTCCCTTTACCTTTCCCTTTTCACCCCTTT
TTTCCCTTTTATCTTTTCCCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_m08.g1 MSMg01no433_m08.g1 CHROMAT_FILE:
MSMg01no433_m08.g1 PHD_FILE: MSMg01no433_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:57 2005
         (240 letters)



>mm_chr3_109659076_109659720
          Length = 645

 Score =  223 bits (115), Expect = 1e-62
 Identities = 137/147 (93%), Gaps = 5/147 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctgaggacagggacaagaacataatagaatgttatagcatgatatttcctcca----- 55
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
Sbjct: 201 tgctgaggacagggacaagaacataatagaatgttatagcatgatatttccttcattttt 260

                                                                       
Query: 56  tttttcggctagctcttcctcgatcaggccaatagctaaagggtatttacatactaagct 115
           ||||| | |||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttttgactagctcttccttgattaggccaatagctaaagggtatttacatactaagct 320

                                      
Query: 116 tacagaagtcaacatggcagagatcta 142
           |||||||||||||||||||||||||||
Sbjct: 321 tacagaagtcaacatggcagagatcta 347



 Score =  180 bits (93), Expect = 7e-50
 Identities = 96/97 (98%)
 Strand = Plus / Plus

                                                                       
Query: 144 aaaataaataaccaatctgcagaagcagattaaggtagtgcttaagctgtaaatcctttg 203
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 507 aaaataaataaccaatctgcagaagcagattaaagtagtgcttaagctgtaaatcctttg 566

                                                
Query: 204 aaaatcaatgatagacaggtttgcagctttccgtcat 240
           |||||||||||||||||||||||||||||||||||||
Sbjct: 567 aaaatcaatgatagacaggtttgcagctttccgtcat 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 240
Length of database: 645
Length adjustment: 9
Effective length of query: 231
Effective length of database: 636
Effective search space:   146916
Effective search space used:   146916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)