BAC Information

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BAC

Clone NameMSMg01-433N08
Chromosome3 (Build37)
Map Location 139,240,793 - 139,241,031
singlet/doubletsinglet
Overlap geneB930007M17Rik
Upstream geneEG545570, LOC668881, LOC668882, Ppia-ps3_1437.1, Tspan5, LOC620771, Rap1gds1, EG229879
Downstream geneLOC100039840, LOC229883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433N08.T7 (MSMg01no433_n08.b1)MSMg01-433N08.TJ (MSMg01no433_n08.g1)
ACCAG525524AG525525
length800735
length of high quality
(start - end)
135 (68 - 202)239 (71 - 309)
definitionCHROMAT_FILE: MSMg01no433_n08.b1 PHD_FILE: MSMg01no433_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:02 2005CHROMAT_FILE: MSMg01no433_n08.g1 PHD_FILE: MSMg01no433_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGTATCGGCGGAATTC
TCACCTTCCCAATTCCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAAT
ATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACC
TCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGC
TGGCTGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGTTATC
GCACGCTTGTACAACCACTCTGGCCCTCAGTCTGGCGTCTCCTCACAACA
TTGTACTTATTATTTCTTGTATGATCCCGTCATACCTACTCCCTGCCATA
TATCCCGATCATGTCCCAACTGGTATGATCTATATCTGTCTTTCCATTTT
TCTTAGCTCCTCTCACCCCCCCCCCCCTCATTTTGCTCATTTTTCTCTAT
GCTTTTTCCCTCCCTTACCGCATTTTCTCCCTCGTCTTCTCCTCTCTACA
CTCTCCCTCCCCCATATTTTATTCCCTCCTCACTTCACTCTACCTAATTT
TCTCTTTTCTTCTTCTTATTTCATTTATTTATCCCCTACCTCTCTCATCT
TTCCCCTTTTCTCCCTCTTTATCCCTTCCTATCCTTTTTTTTCCTCTTCC
CTCCATTTTACATCATTCTTCTTCCTACCCTTTTCTATTATTTTTCTCTA
ATCCCACCCCTCCCCCCATCACCTTTTTCATTACTTTCTCTCTCTCTCTT
CCATAATAATAACTTTTATTTTTTCCTCCTCCTCCTCTCTCCTCCTCTTT

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTCCGGATTAATATTGTTACTGTTAACTT
CTTTCAGTTTTCACTAAATTAGAAGCAATGGCCTTTAATTCTTTTCTAGC
TCAAGTTTGAGGTATAATTGCATATTTAGTACTCTATTATCAGTTAAAGC
ATAATAAGCAATCTGAATCTCTTATTTATGAAAGTAAGCTAACTCTTCTG
GTCATCTGAAAAGATGAAAGAGGTTGAGAACTGAATTTCTTTGTGCTGTT
CATCTTTTAAGTTATCTCTCAGTAGACCTTGCCGATTGAATGGGGAAAAC
TCAGGCATCCTACTATGACCTTTTGCCCTTACTTACTGACTAGCTGATTG
ATTGATACAACCCCCTACCATTTAGCCTATGCTGTTCATGATCTTGTATT
GCCTTTCCCTCTCTTTTCCTTATCCTTTTACTTATTCGCTATACCCCTTC
CCTGTTCCCTCTTTCACTTTACTCTTCCTATTTTTCCCTTACTATGCCTT
TTCCTTCTGCCTTCCTTTCCCCGTTCTTTACTTTTTTCTTTTTTCTCTGC
CCTCCACACTCCCCCTTTTCAAACCCTCGCTTTTCCTTCACCTTTCCATC
CACGTTCCCTTTCCTTCTCTTCCCTACTTTCCCTCTTCCTTTCTCCCTTT
TCTTTTTCCTTCCTTTCCTTTTTCCTTTTCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_n08.g1 MSMg01no433_n08.g1 CHROMAT_FILE:
MSMg01no433_n08.g1 PHD_FILE: MSMg01no433_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:02 2005
         (239 letters)



>mm_chr3_139240593_139241231
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctccggattaatattgttactgttaacttctttcagttttcactaaattagaagcaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tctccggattaatattgttactgttaacttctttcagttttcactaaattagaagcaatg 380

                                                                       
Query: 61  gcctttaattcttttctagctcaagtttgaggtataattgcatatttagtactctattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gcctttaattcttttctagctcaagtttgaggtataattgcatatttagtactctattat 320

                                                                       
Query: 121 cagttaaagcataataagcaatctgaatctcttatttatgaaagtaagctaactcttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cagttaaagcataataagcaatctgaatctcttatttatgaaagtaagctaactcttctg 260

                                                                      
Query: 181 gtcatctgaaaagatgaaagaggttgagaactgaatttctttgtgctgttcatctttta 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gtcatctgaaaagatgaaagaggttgagaactgaatttctttgtgctgttcatctttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)