BAC Information

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BAC

Clone NameMSMg01-434A07
Chromosome3 (Build37)
Map Location 108,460,721 - 108,461,200
singlet/doubletsinglet
Overlap geneClcc1
Upstream geneAhcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166
Downstream geneGpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434A07.T7 (MSMg01no434_a07.b1)MSMg01-434A07.TJ (MSMg01no434_a07.g1)
ACCAG525665AG525666
length745817
length of high quality
(start - end)
481 (37 - 517)42 (67 - 108)
definitionCHROMAT_FILE: MSMg01no434_a07.b1 PHD_FILE: MSMg01no434_a07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:17 2005CHROMAT_FILE: MSMg01no434_a07.g1 PHD_FILE: MSMg01no434_a07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGG
AGAGTTACAAAGCTACCTAGTGATACCCTGTCTCAACACACACACACACA
GAGACAGACAGACAGACAGACAGATCACAGTAAGGCAATGTGAAGATGCA
GGCCATCTACAAACCATCCTGCAAGCTGCCGCCTCTCCATCAAACCATTC
TCTTCCAGGGAGCCAGGAAGGCTCACAAGCCTGAGGAAGCCCCTCTCTAA
GCTATAAAAGCGGTAAACGATTGCTGGGGGGAGGGACTCATCAGAGACAT
AGCTTCCTCTAAGTGTCTCACCCATGGTACTGTGTGCCTTTTCCTTCTAT
AGATACATACAGTTGCCCCAGTCGGTCACCCACGCACCATAAGGAGCCCC
AATAAAGCCATTGTTCATCAAGCTAGACTTGGATGGAACTGTTTCTCCGG
CCTTTCATTTACCTTTTTATCTGAAGGGAATAAAAATAAAATTGTCAAGG
GGCTGGAGAGAGAGATGGCTCAGCAGCGGAGAGCACTAGCTGTTCTTCCA
GAGGTCCTGAGTTCAATTCTCAGAAACCATATGGTGGCTCACAAGATTGG
GATCTAATGCCCTCTTCTTGGATGCTTGCCTACTTGCCGACAGAGCACTC
CTATCTATAAACATCTTATTAATAATCCAACGACCCAAGCCTGTCCTTGG
CTGGTAAAGTCCTTTCTACCAAAAGTTTAAAAAAAGAAGTCGCTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAGGCCAGGCTGGTTAGAGGAAGTTCCAAGGCAG
CCAGGGCTACACTGAGACACCTTGTAGTAGTAGGAGGAGGAGGAGGAAGA
TGAGTTTTTTTTTTTTTTNTTTTTTTTGNTTTTTTGTTTTTGTTGGTGTT
TTTTTTTTTTTTTTTTGGGGTTTTTTTTTTTTTTTTTTTTGGTTTTTTTT
TTTTTCNNTCTTNGTTTCTTCTTCTTTTTGCCCTGTTTTTCTCTCCTCCC
CTCCCCCCCCCCCTCTTTCTCTTTTCTCCCCCGCTTCCCCCTTTTCTCGT
CTCCTTTTTTTCTCTCCCCCCCCCCCCCTTCTCTTTTTTTTTTCTTTCCT
CCCCCTTTCCCCTCCCCCCCCCCCCACCCCTCCCCCTCTCTTCCCCCCCC
TCCTTCTTTCCCCCCCCCTTCCCCCTCTTTCCCCCCTTTTTCCCCCCCTC
CCTCTCTTCTCCCCCTTTTCCCCTTCCCCTTCTCCCCTCCCTCCCCCCCT
TCCTTCCCCCTTCCCCCCCTCCTCCTCCCTCCCCTCTCTTCCTCCTCCTT
CCCCCTCCCTCTCCCCTCCCCCCCCCCTCCTCTTTCCCCTCCCCCTCCTC
CCCCTCCTCCCCTCCCCCTCCCTCCTCTTCCCCCCCTCCTTTCCCCTCCC
CACCCCTCCCCCCTCCCCCCCCCTCTCTTTTCTCCTCTCCCTCCCTCCCC
CCTTTTCCCCCCTCCCCTTCCTTCCCCTCCTCCTCTCCCCTCTTCTCTCC
CTTCCCCATCTCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_a07.b1 MSMg01no434_a07.b1 CHROMAT_FILE:
MSMg01no434_a07.b1 PHD_FILE: MSMg01no434_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:17 2005
         (481 letters)



>mm_chr3_108460433_108461314
          Length = 882

 Score =  839 bits (434), Expect = 0.0
 Identities = 468/480 (97%), Gaps = 3/480 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggagagttacaaagctacctagtgataccctgtctcaacacacacacacac- 63
           ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 768 gaattccaggagagccagaaagctacctagtgataccctgtctcaacacacacacacaca 709

                                                                       
Query: 64  -agagacagacagacagacagacagatcacagtaaggcaatgtgaagatgcaggccatct 122
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gagagacagacagacagacagacagatcacagtaaggcaatgtgaagatgcaggccatct 649

                                                                       
Query: 123 acaaaccatcctgcaagctgccgcctctccatcaaaccattctcttccagggagccagga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 648 acaaaccatcctgcaagctgccgcctctccatcaaaccattctcttccagggagccaggc 589

                                                                       
Query: 183 aggctcacaagcctgaggaagcccctctctaagctataaaagcggtaaacgattgctggg 242
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 588 aggctcacaagcctgaggaagcccctctctaagctataaaagtggtaaacgattgctggg 529

                                                                       
Query: 243 gggagggactcatcagagacatagcttcctctaagtgtctcacccatggtactgtgtgcc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gggagggactcatcagagacatagcttcctctaagtgtctcacccatggtactgtgtgcc 469

                                                                       
Query: 303 ttttccttctatagatacatacagttgccccagtcggtcacccacgcaccataaggagcc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ttttccttctatagatacatacagttgccccagtcggtcacccacgcaccataaggagcc 409

                                                                       
Query: 363 ccaataaagccattgttcatcaagctagacttggatggaactgtttctccggcctttcat 422
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 408 ccaataaagccactgttcatcaagctagacttggatggaactgtttctccggcctgtcat 349

                                                                       
Query: 423 ttaccttttta-tctgaagggaataaaaataaaattgtcaaggggctggagagagagatg 481
           |||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 348 ttacatttttaatctgaagggaataaaaatagaattgtcaaggggctggagagagagatg 289


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 882
Length adjustment: 10
Effective length of query: 471
Effective length of database: 872
Effective search space:   410712
Effective search space used:   410712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)