BAC Information

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BAC

Clone NameMSMg01-435A18
Chromosome3 (Build37)
Map Location 139,365,205 - 139,365,472
singlet/doubletsinglet
Overlap geneB930007M17Rik
Upstream geneTspan5, LOC620771, Rap1gds1, EG229879, LOC100039840
Downstream geneLOC229883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435A18.T7 (MSMg01no435_a18.b1)MSMg01-435A18.TJ (MSMg01no435_a18.g1)
ACCAG526442AG526443
length854807
length of high quality
(start - end)
88 (43 - 130)268 (72 - 339)
definitionCHROMAT_FILE: MSMg01no435_a18.b1 PHD_FILE: MSMg01no435_a18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:38 2005CHROMAT_FILE: MSMg01no435_a18.g1 PHD_FILE: MSMg01no435_a18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCTGTTTACCTCTGTACCCCATTTTTAATTGGGTTATTTGTGTTGTTG
GTGTCTAACTTCTTGACCTCCTTGACAAATTTTGATATTAGCCCTCTGTT
ATATGTAGGGTTGTGCGAAGATCCTTTCTTCCCTCTGCACTATGCCGCCT
TGCTCTCTTCTCACCGCTCTTTGCCTTATTAACTCTTCACCATATTTATT
TTTGTTTTCCTCATTTTTTTCCTTTTTTTTACTTGTTGCCCTCCCCTCTT
TCCCTTCACTTTCTTTTTTCTCCCCCCCTCTCACTTGTTCTTCCCCCTTT
TTTTTTTTTTTTTCTTCCGACCTCCCCCGTCTTTTTTCCTTTTTTTTCTC
TTCTCCTCCTACTCTCCCCACTTCCTTTTTTTCCCCTTTTGCTTCTTATC
CTTCCATTTCCCCTCCCTTTTTCTCTCCCTTTCTAATCTTTTCTTTCCCT
TTCCCTCTTTTTCCCTTTTTTTTTCTATATCCCCCTCTTCTCTTACCTTC
TTTTCCTTCTCCTTTCCTTCCTTTTCCTTCCCCCTTTCCCTTCCCCCCCT
TCTTCTTCTCCTCCCTCCTCCTTTTTTTTCACCTTTTTTTTCTTTTTCCC
TCCCCCTCCCCTTTCTTTCCCTTATTCCTTTTTCCTCTTTCTCTTTTTCC
CCTTTTCTTTCCTTCTCCCTTCTTTTCCTCCTTCCTTTCTTCCTTTTTTC
TCCTCCTCCTCTTTTCTTTGTTTTTCTCCCTTTCTTTCTCTCTTTCCTCA
CCTCCCTCCTCCCTTTCTCTCATTTTCCCACCTCCTACCCTCTTCTTTTC
TGTC
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTCACAATGACTATGATAATAACTTAGGC
TTTGATTATTTTGTAATGTAGGATAGGGCTTAGATTGATGGTGCTGTATC
TAAAGACTCTCCCATTTCATGTTTATACTACTAAAAGGTATTGTACTGTA
AGGCTTGAACATTTTTATATTAATTATTACAGAACTAGATTCTAAATAAA
CAAATTATTTATCAAGTTAATAAACATCTAAACCTTCTAATTCTGATACA
TCACAGACTACTATATTTTCAAATCAAATTTCTTATTAGTATCCCTGACA
TAAAATATATATAACTCTGATATTTACATTTATGGTTAAGAATATCCAAG
TTAAAATATTTTATACTATGCGCTACACCATATTTCATACCTCTCACGCT
TTTTAAACAATTCCGCTTCTCCACATCCATTCCTATTTTCCAATTATTAT
CCCAACCTTCCCCCCCCTATTCTTTTTTTTTCCCCCTTTTCCACACGACC
TTATATTGCACAAATTCCCCTTTTTTTTTTTTTATTCTTATCTCTCCACC
CATTTTTCCCTCCCTCCCCCCTTTTTATTCCCCCCTCTTCTCTTTTCCCT
CCCTCCTTTCATTTTTCTCCCTCCCCCCCCTTTTTCTATTCGTTCATTAT
TCTCCCATCACTATCCCCCTCTCTACTATTTTCTATTTGTATCCCTATTC
AACTTTCTCTTCATTTATTATACACCTAATCCTCACCCCATATTTCTCCT
ATTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_a18.g1 MSMg01no435_a18.g1 CHROMAT_FILE:
MSMg01no435_a18.g1 PHD_FILE: MSMg01no435_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:38 2005
         (268 letters)



>mm_chr3_139365005_139365672
          Length = 668

 Score =  441 bits (228), Expect = e-128
 Identities = 258/272 (94%), Gaps = 8/272 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcacaatgactatgataataacttaggctttgattattttgtaatgtaggatagggctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcacaatgactatgataataacttaggctttgattattttgtaatgtaggatagggctt 260

                                                                       
Query: 61  agattgatggtgctgtatctaaagactctcccatttcatgtttatactactaaaaggtat 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 agattgatggtgctgtatctaaagactctcccgtttcatgtttatactactaaaaggtat 320

                                                                       
Query: 121 tgtactgtaaggcttgaacatttttatattaattattacagaactagattctaaataaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtactgtaaggcttgaacatttttatattaattattacagaactagattctaaataaac 380

                                                                       
Query: 181 aaattatttatcaagttaataaacatctaaaccttctaattctgatacatcacagactac 240
           || ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 381 aagttatttatcaagttaataaacatctaaaccttcaaattctgatatatcacagactac 440

                                           
Query: 241 tatatttt----caaatcaaatttcttattag 268
            | |        ||||||||||||||||||||
Sbjct: 441 caga----gaaacaaatcaaatttcttattag 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)