BAC Information

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BAC

Clone NameMSMg01-435F06
Chromosome3 (Build37)
Map Location 139,957,185 - 139,957,591
singlet/doubletsinglet
Overlap genenone
Upstream geneB930007M17Rik, LOC100039840, LOC229883
Downstream geneLOC621343, 4930590L14Rik, Pdha2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435F06.T7 (MSMg01no435_f06.b1)MSMg01-435F06.TJ (MSMg01no435_f06.g1)
ACCAG526658AG526659
length774755
length of high quality
(start - end)
389 (45 - 433)440 (77 - 516)
definitionCHROMAT_FILE: MSMg01no435_f06.b1 PHD_FILE: MSMg01no435_f06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:01 2005CHROMAT_FILE: MSMg01no435_f06.g1 PHD_FILE: MSMg01no435_f06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTTGATTTCTTCTTTTATTTTGTAGCAGTGAAAACACTAGAAGTT
AGTTCTTTTATGGGAATTTTTAAACTTGAACTTTCCCCACCCATCCAACC
CTTCTCATTTTAGTTCACTCAAGCAATGGGCATCAAGAAACTCAGGCCAA
GGATCTCATGAGTCTATCAAGATGATAGGAATCAATGGACAGATGCTCAA
AGAAACAAGGAGATTTCCTCTTCATTTTGCAGCTTCTTTCTTCCCAATAA
AGCTCCACATGTTATAGTAGCATGTTTGAGTCACATAGAGAGGGCCTTTG
AGTTTCACAAGGGAAAAAAACTGATGTTCACGCTGCTGTTCTATGTGTTA
TGTGAGTTAAGGACAGAGGTGTTGCGAGTCAGAGTCCTCAGTTGAGTTTG
TCAGGGGTAACTTCCTTAGTAAGAATGTGTGAGTGCACAGCTACCATTGA
TGATACCATCTGGTTGCCTAAAAATGGCTGGCTAAAAAAAGGGACCTTTG
AATACATTTCCCCTATCCCCTTTCTAACAAGCTTCCCGGAAAACGTTCCT
GTGGGGATGTAACATTCTTTAAACGAGCCCATGTGTCCTTTTTGATTCAC
TCCCTCCCAACCCTGGTTTTTTTTAACACTTTCCTTAAGACCCTTATTTT
CTTTTATCTCTCCTCGTCCCCCCAGTTCAAATTTTATACCACCGCTTACC
TATTCCATTTATCACCCTCCCCCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATGAAAATGTGGACACATAATGT
CCAAACTTATGGGACACAATGAAAGCAGTGCTCAAGGGAAAGCCCATAGC
ACTATATGCCTTCCTAAAGAAATTATTGAGATTTCATACTTTGAATACCT
GAAAGCTCTGCACAAGAAGAAATTAACACACCCAGGAGGAGGTCATGGCA
GGAAATAATCAAAATGAAGAGTTGGTTCCTTGAGACGATCAACATGATAA
ACAAATCCATAGCCAAACTAACTGAAAGGCAGAAAGACATTCCCCAAATC
AACGAAATCAGAAATGAAAGGGTGGCATAGCAACAGATATTGAGGAAATC
CAAAGAATCGTTAGATCAAACACCTGTATTCTACAAAATTGGAAAATCTA
AACAAAATGTACAATTTCCACAATAGATACTACTTACCAAAATTAAATGA
AGGTCAGGTAAATGATTTAAATATTCTCATAACTCTTAAGGAAATATAAG
TAGGCCTTAAAAGTTTCCCAAAGAAAAAACCCGAGTCCGATGGTTTTAGC
CCGAAATTCTTTTCGTATCCCAAAAAGATAAAAGGAAATTTCCCCAAATA
CTCCTCAAAAAACCCGGAAGGCCCCTCTCCATTGGTTTTTGAAGGCCCCT
CCCCCCTGAATCTANCCCCCTAGATTTATTTAAAAAACTTCGGTCCTTTT
TTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_f06.b1 MSMg01no435_f06.b1 CHROMAT_FILE:
MSMg01no435_f06.b1 PHD_FILE: MSMg01no435_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:01 2005
         (389 letters)



>mm_chr3_139956999_139957791
          Length = 793

 Score =  586 bits (303), Expect = e-172
 Identities = 374/409 (91%), Gaps = 25/409 (6%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctttgatttcttcttttattttgtagcagtgaaaacactagaagttagttctt 63
           ||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 187 ggaattcctttgaattattcttttattttgtagcagtgaaaacattagaagttagttctt 246

                                                                       
Query: 64  ttatgggaatttttaaacttgaactttccccacccatccaacccttctcattttagttca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 247 ttatgggaatttttaaacttgaactttccccacccatccaacccttctcattttagtcca 306

                                                                       
Query: 124 ctcaagcaatgggcatcaag-aaactcaggccaaggatctcatgagtctatcaagatgat 182
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ctcaagcaatgggcatcaaggaaactcaggccaaggatctcatgagtctatcaagatgat 366

                                                                       
Query: 183 aggaatcaatggacagatgctcaaa-gaaacaaggagatttcctcttcattttgcagctt 241
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 367 aggaatcaatggacagatgctcaaaagaaacaaggagatttcctcttcattttgcagctt 426

                                                                       
Query: 242 ctttc-ttcccaataaagctccacat---------------gttatagtagcatgtttga 285
            |||| ||||||||||||||||||||               |||||||||||||||||||
Sbjct: 427 -tttccttcccaataaagctccacatactaataagtactatgttatagtagcatgtttga 485

                                                                       
Query: 286 gtcacatagagagggcctttgagtttcacaagggaaaaaaa----ctgatgttcacgctg 341
           ||||||||||||||||| |||||||||||||||||||||||    ||||||||||| |||
Sbjct: 486 gtcacatagagagggcccttgagtttcacaagggaaaaaaaaaccctgatgttcaccctg 545

                                                            
Query: 342 ctgttcta-tgtgttatgtgagttaaggacagaggtgttgcgagtcaga 389
           ||||| || |||||| ||||||||||||| || ||||||| ||||||||
Sbjct: 546 ctgtt-taatgtgttgtgtgagttaaggaaagtggtgttgtgagtcaga 593


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 793
Length adjustment: 9
Effective length of query: 380
Effective length of database: 784
Effective search space:   297920
Effective search space used:   297920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)