BAC Information

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BAC

Clone NameMSMg01-435N19
Chromosome3 (Build37)
Map Location 103,415,063 - 103,415,378
singlet/doubletsinglet
Overlap geneSyt6
Upstream geneTspan2, Tshb, Sycp1, LOC668425, LOC100043517, Nr1h5, 5730470L24Rik, Csde1, Nras, Ampd1, Dennd2c, Bcas2, Trim33
Downstream geneAtg4a-ps, LOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22, LOC668452, Rsbn1, Phtf1, Magi3, EG433634, LOC668622, Lrig2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435N19.T7 (MSMg01no435_n19.b1)MSMg01-435N19.TJ (MSMg01no435_n19.g1)
ACCAG527067AG527068
length812804
length of high quality
(start - end)
316 (69 - 384)241 (69 - 309)
definitionCHROMAT_FILE: MSMg01no435_n19.b1 PHD_FILE: MSMg01no435_n19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:46 2005CHROMAT_FILE: MSMg01no435_n19.g1 PHD_FILE: MSMg01no435_n19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCC
AGATGTTTCCAAAAGAACTTTCTACCTTTCATTTATATGTTTCCTGCGTT
TTCTCTTCATTGGTAAATAGCTCTTCCATCGGCCCCAGTGCTCAAGCCAG
AAATGAGAAACTATCCGGAACCCAACTTCTCTTCTTTACATTGAGTTCTT
TACCAAGCTGAACAAATTCTGTCTCCAAATCTCACCTCAAGTCTCTCTCC
TCTCCCCATCTCTTATGCCACAGGAAGCCAAGACACGTCTACCTGTACCC
ACCTGGCCCCCTTGTTTCCCTTTGTTCTCACCTGGGTGCCAGAATATTCT
TCATAATATGAAGAGGATTGCCTCTGCACCTTCTTAAGTCTCCAATGGCT
TTCCTCGCGCTGCGCTTTGAATGTGAAGCGACCCCCCTATCGACCATAGT
GTGCTGTCACTCTTTATGTAGCGTTTGTAATATTTAGCAACTACCTACTT
TCACTAATTCTTCCTTCTTTTTATTTTTCCTTAATCTAGCATCTTTTCTT
CTCCCCCGTCTTTTTACCCCCCCTCCTTTTTCTATTCTTTCCCCCTTCCC
TTCCCCTTTTCTTTACTTTCCTATTCTCTTCACCTATCATTCTACCCCAT
TTTATTCTCTCCTCCTCTCTTTTCCTTCTTTTCCTATCTTTTTCTCCTTC
CTATTTCTCCTTTTTTCTTTTTTCTTTTTTACCCTCACTTCACTTACCCC
CCCCTTTTTCCTCCATCTCCTCATTGTCTACCCACTTATTCCTTCCCTCC
TTTATATTTATA
CAGCGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACGCAGTTGAATCCTTCTTAACAGTCTGCTTT
ACGGGAACCTTTCCTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGA
TCTTCCTTGCGCCAGTCCCGAGTTTTTTCTCGTCCCGGAATTCGGCACCA
ATTGTTATTAGACGCGTTCTCACGACCGGCCAGGAAAGACGCAACAAACC
AGAATCTTCTGCGGCAAAGCTTTATTGCTTACATCTTCAGGAGCCAGAGT
GCAAGAAGCAAGATTTTTATAAAACGAAACCCTGTCCCTCTTAAGGAGAA
TTATCCTTCGCCTCGGACGTGTCACTCCCTGATTGGCTGCAGCCCATCGT
TCGAGTTGACGTCACGTTGAATTCTTATCTACAGTTAGTCTCTCTTATTT
TTGGCACTTGCCCACATTATTTGTTTTATCTTTTGAACACGCTTGCCACT
TTCATCTTGTTATTTTCCCCTTTGTTCCTTTTCCTTTTTTTTTTCATCGC
TCTCTTACCTCTGATTGCCTGTTTTACCCCCCCCCCCCCCCTTTATTTCT
TACTCCCTTTTAATACCCCCCTTTCCAATATCCTTATTTTTTACTCTTTA
TTTACTATTATCCCCCCCTCTTTCCATCCCTCTTTCATTTTTTCCCTCTC
GCCAATTTTTTACCTATCAAAACCCCTCAGATTTCCTATCTCTATAATTT
CCTCTTCTTTCCCTTATCCTTCCCTTATCTTTCTCTTTCCTCTTCCTCCC
TCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_n19.b1 MSMg01no435_n19.b1 CHROMAT_FILE:
MSMg01no435_n19.b1 PHD_FILE: MSMg01no435_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:46 2005
         (316 letters)



>mm_chr3_103414863_103415578
          Length = 716

 Score =  572 bits (296), Expect = e-168
 Identities = 311/316 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctacctttcatttatatgtttcctgcgttttctcttcattggtaaatagctcttcca 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 516 tttctacctttcatttatatgtttcctgcgttttctcttccttggtaaatagctcttcca 457

                                                                       
Query: 61  tcggccccagtgctcaagccagaaatgagaaactatccggaacccaacttctcttcttta 120
           |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 456 tcggccccagtgctcaagtcagaaatgagaaactatctggaacccaacttctcttcttta 397

                                                                       
Query: 121 cattgagttctttaccaagctgaacaaattctgtctccaaatctcacctcaagtctctct 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 396 cattgagttctttaccaagctgagcaaattctgtctccaaatctcacctcaagtctctct 337

                                                                       
Query: 181 cctctccccatctcttatgccacaggaagccaagacacgtctacctgtacccacctggcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cctctccccatctcttatgccacaggaagccaagacacgtctacctgtacccacctggcc 277

                                                                       
Query: 241 cccttgtttccctttgttctcacctgggtgccagaatattcttcataatatgaagaggat 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 276 cccttgtttccctttgttctcacctgggtgccagaatattcttcaaaatatgaagaggat 217

                           
Query: 301 tgcctctgcaccttct 316
           ||||||||||||||||
Sbjct: 216 tgcctctgcaccttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)