TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTGACATTTTGCCTTCTGGGAATGATGTGGCTATTATACTCAAG
ATCATATTGTAGCTTCTGGTGCCTTCCCAGGGCCTGCCCAAGGCTTGGGC
AAGTCAACATTAAATTATAGATGTGGGATTGTTTCTGAGGAAATGGGAGT
CATGGTTTTCAGTGGTGTGGCCACTGGTGCGTTGTCTATACCTCAGTAGA
CAGCTCCATACCCATGTCTGTGCAGCAGCCCTGGCACAATTGAATTGATC
ACAAAACAAAACAAAACAAAACAAACAAACAAACAAACAAAAAACAGAAA
CAAAAGACATGAAAGTGGGAGGGGCACTTATCAGGAAGATTGAGAGGGCA
GGGAGGTAAGAGAAGACTTGTGTGGTATGAATATGATCAAGTGCATTAAC
TACATGTATGAAATTATCAAACAATGCACTGTTTTGTTTTGGTTTTTGGT
TTTTTTTTTTTTGGCTTTTTCGAAACAGGGTTTCTCTGCATAGCCCTGGC
TGTCCCAGAACTCACTTTGTAGACCATGCTGTCCTCTTACCCACAAAACT
TGTCTGCCTCTTGCTCCCGAGGGCTGTAAATAAAGGGCGCGTGTCCCCTC
CCCCTGGAACAATATTTCTTCCTTTTTATGTACTTTTTTACCTTATTTCA
CCTGCCCTGAATTTTTTTCTTCTTTTGTTTACATTGTCTTTCTCCACCCC
TTTTTCTCCGCTTCTTTTTTTTTTN

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTAGCTTCTCAGGATGGGAGAAAT
AAACTTCTCTTCTTTATAAAGATTATTTAGGCAGCAGAGAATAATAGCTA
TTAATTATATAGACAGAAAATCAGTAAGAGAGGTCAAAGTTGAGTAGATA
AACAAAGTTGATAAATATTAGCCAAACTAACGAAGATGAAAATAGGCATG
ACACAAATGACTAATATCAGGAATGAAAGATTTGATGAGGGGAGAAGGGA
GTGAGGAAGAGTTCACCAACACTATTGTTGTATGAAAAGATTTATGGAAA
CCTGCTACTTTATAAGAACATGGTTGAAAGTGAGTTTGAATGGAGGTGCC
TGACATGGCTAGACAGTGATGCTCCCAGAAATCATGGGTTATTAAAGCAA
GATCTGTTGTCAGAGGTGGGATAGCTCCCTGTGAGTTGTTGATAAGGGCT
GCCCTGCATTCCTAGATACAATCGGCTTTTTGCCTTTGACCCTTGGTTAC
CCTTGTTACTATATGCTTGATGACCTCCCCGACTTTGGCTTGTCTGCCCG
ACCTTCCTCATTTGCTCTTTTATTCTGATTTTCTCCTTTTCCATTTCTTC
TCGTATTCGTTTGCTTTTTTGGTTTTACTGGCTTTCTCTCTCTTGCTGTC
TTTTCCCTATTCCCTTTTCATCCCTCCCTCCTCCCAGTTTCCTTTTATCC
TCCCTTCCTTTTTTTTTTCCTATTCTTCTCTCTTCT

Query= MSMg01no436_a20.b1 MSMg01no436_a20.b1 CHROMAT_FILE:
MSMg01no436_a20.b1 PHD_FILE: MSMg01no436_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:01 2005
         (470 letters)



>mm_chr3_81840844_81841713
          Length = 870

 Score =  795 bits (411), Expect = 0.0
 Identities = 446/465 (95%), Gaps = 13/465 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccctgacattttgccttctgggaatgatgtggctattatactcaagatcatattg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccctgacattttgccttctgggaatgatgtggctattatactcaagatcatattg 264

                                                                       
Query: 65  tagcttctggtgccttcccagggcctgcccaaggcttgggcaagtcaacattaaattata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagcttctggtgccttcccagggcctgcccaaggcttgggcaagtcaacattaaattata 324

                                                                       
Query: 125 gatgtgggattgtttctgaggaaatgggagtcatggttttcagtggtgtggccactggtg 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 325 gatgtgggattgtttctgaggaaatgggagtcatggttttcagtggtgtggctactggtg 384

                                                                       
Query: 185 cgttgtctatacctcagtagacagctccatacccatgtctgtgcagcagccctggcacaa 244
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 385 tgttgtctatacctcagtagacagctccttacccatgtctgtgcagcagccctggcacaa 444

                                                                       
Query: 245 ttgaattgatcacaaaacaaaacaaaacaaaacaaacaaacaaacaaacaaaaaacagaa 304
           ||||||||||||||||||||||||||||||||||||||||            ||||||||
Sbjct: 445 ttgaattgatcacaaaacaaaacaaaacaaaacaaacaaa------------aaacagaa 492

                                                                       
Query: 305 acaaaagacatgaaagtgggaggggcacttatcaggaagattgagagggcagggaggtaa 364
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 493 acaaaagacatgaaagtgggaggggcacttctcaggaagattgagagggcagggaggtaa 552

                                                                       
Query: 365 gagaagacttgtgtggtatgaatatgatcaagtgcattaactacatgtatgaaattatca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gagaagacttgtgtggtatgaatatgatcaagtgcattaactacatgtatgaaattatca 612

                                                        
Query: 425 aacaatgcactgttttgttttggtttttggttttttt-ttttttg 468
           |||||| ||||||||||||||||||||||| |||||| |||||||
Sbjct: 613 aacaatacactgttttgttttggtttttgggttttttgttttttg 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)