NGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTTAGCTTTGTTACTCATATACAATTTGACCTTAGATAACCAAAA
TTTCTCTACTTCCTGAGTTGTAACATAATGTACTATTAACAACTCTATCT
CAACTATCAACTATGCTTTAAAAACTTTATGATTTTATGATCCAGGTCTA
CTTATTATAACTTACCTCTTTGTGTTAAATTCCAAGGGTCAAAAATCTAC
CACTCATAGAACATGTTAGACTGCCTTATCGCAGTCATATGTAGTTCTAT
TTACCACGCTGCCACTTCGCCTTAATGCCACTTCCAGCACCTTTGCTTTA
CAGCTCTAGAAGCCCCAAGCATTCACAATTCACATGCACAGTTGTCTCTT
TGACCTGACTCCAAACTGCCTTACTTCCTTAAACTAAACTCATAGTTCTT
CTCCCCACTTTCATCTTCCCAGCATTCTTTTGCCCACAACTACAGACTAT
GTAATCTCTTTTTATATTATTTTACCTATTAGCACACTAAAGGTCCAAAT
CAACAATTCCTGAACTGCAGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTNNNNNNNNNNNNNNNNTNNTTTTTNNTTTTTNTTTTNNNTTTTTTTTT
TTTTTTTTTTTTTNTTTTTTTTNTTTNNTTNNNTTTTTTTNNTTTTTTTT
TTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTNTTNTTTTT

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTCCTATTACCTACTTACAGGGGGT
TAATTTGTTTCACACTAACTCCATTTTGTTGCTCTGACTGGATCTCTCTA
TGTAGCCTTGTGGGTCATGAACTTCAGTTCTTTCTGCTTCCACTTCCTGA
ATGCTGTGATTTCAGGCGTGTAGCATCACACTTGTTAGGACACCAAGAGA
TAAGACAATGGAAGCACATATTTTATAGAAGCCAATATAATTTACATTTT
TTAATTCTCCCAACACTTTTTTTTCACACACACACACACACAGAGAGAGA
GAGAGAGAGAGAGAGAGACACAGAGACAGAGACAGAGACAGAGACAGACA
AAGACAGAGAGACAGAGAGACAGAGAGACAGAGAGACAGATAGACAGAGA
CAGACAGAGAGAGACAGATACAGAGTGGAGGGGGGGTCAGAGATGAGATT
GTAAGGGAGGTCNACATGGGAGCCTATGTATGTATGATTTTGAAGCTTTT
TTTTTCNCCTGAATGGTAGTGTAGGTCTTGCTTAATGGATATTTTCCTAG
TGTTCTTTGTANTACCATGGTGTATATCTTTAATATTCTATACCTTTATT
TTTTTTTTTTTTTGGGCACGCTCCGTTGCTATTCCTTTCTCCCCCACCCA
AGTTTATATTATTTCTTTTTCTCTTCCCTTCTCTTTTTTTTGCCC

Query= MSMg01no436_d12.b1 MSMg01no436_d12.b1 CHROMAT_FILE:
MSMg01no436_d12.b1 PHD_FILE: MSMg01no436_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:14 2005
         (555 letters)



>mm_chr3_72806972_72807926
          Length = 955

 Score = 1046 bits (541), Expect = 0.0
 Identities = 547/549 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   aatttagctttgttactcatatacaatttgaccttagataaccaaaatttctctacttcc 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aatttagctttgttactcatatacaatttgaccttagataaccaaaatttctctacttcc 265

                                                                       
Query: 66  tgagttgtaacataatgtactattaacaactctatctcaactatcaactatgctttaaaa 125
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 266 tgagttgtaacataatgtactattaacaactctatctcaactatcaactacgctttaaaa 325

                                                                       
Query: 126 actttatgattttatgatccaggtctacttattataacttacctctttgtgttaaattcc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 actttatgattttatgatccaggtctacttattataacttacctctttgtgttaaattcc 385

                                                                       
Query: 186 aagggtcaaaaatctaccactcatagaacatgttagactgccttatcgcagtcatatgta 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aagggtcaaaaatctaccactcatagaacatgttagactgccttatcgcagtcatatgta 445

                                                                       
Query: 246 gttctatttaccacgctgccacttcgccttaatgccacttccagcacctttgctttacag 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 446 gttctatttaccacgctgccacttcgccttaatgccacttccagcacctttgctttacaa 505

                                                                       
Query: 306 ctctagaagccccaagcattcacaattcacatgcacagttgtctctttgacctgactcca 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ctctagaagccccaagcattcacaattcacatgcacagttgtctctttgacctgactcca 565

                                                                       
Query: 366 aactgccttacttccttaaactaaactcatagttcttctccccactttcatcttcccagc 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aactgccttacttccttaaactaaactcatagttcttctccccactttcatcttcccagc 625

                                                                       
Query: 426 attcttttgcccacaactacagactatgtaatctctttttatattattttacctattagc 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 attcttttgcccacaactacagactatgtaatctctttttatattattttacctattagc 685

                                                                       
Query: 486 acactaaaggtccaaatcaacaattcctgaactgcagtggtgtgtgtgtgtgtgtgtgtg 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 acactaaaggtccaaatcaacaattcctgaactgcagtggtgtgtgtgtgtgtgtgtgtg 745

                    
Query: 546 tgtgtgtgt 554
           |||||||||
Sbjct: 746 tgtgtgtgt 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)