BAC Information

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BAC

Clone NameMSMg01-436L24
Chromosome3 (Build37)
Map Location 146,214,871 - 146,215,297
singlet/doubletsinglet
Overlap genenone
Upstream geneCol24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5
Downstream geneLOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436L24.T7 (MSMg01no436_l24.b1)MSMg01-436L24.TJ (MSMg01no436_l24.g1)
ACCAG527743AG527744
length814795
length of high quality
(start - end)		324 (76 - 399)427 (78 - 504)
definitionCHROMAT_FILE: MSMg01no436_l24.b1 PHD_FILE: MSMg01no436_l24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:55 2005CHROMAT_FILE: MSMg01no436_l24.g1 PHD_FILE: MSMg01no436_l24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTATGTGTTTCCGAGGGGATACTTACACCCAACCAATGGACTG
AAGTGGGGACCCCTGTGGTTGAATTATGGAAAGGCTGGAAGAAGCTGAGG
AGGAGGGTGACCCCACAGGAAGACCAGCAGTCTCAACTAGTCAGACCCCT
GAGTTCTCTCAGACACTGAGCCACCAACCAGGCTGGCATAGCTATCTGGT
AGAGGGCCTCCCTCCCCCACCCCCAACACACACAGCAGAGGACTGCCTGG
TCTGTCCTCAGTGAGAGAAGATGCACCTAAGGAGAGACTTGAGGCTCCAG
GGAGTGAGGAGGCCATCAGGGGGTGGGGATGAAGGAGTGGGGAGGNNNNN
NNNNNNNNTNTNNNNNNNNNNNNNNNNNNNNTNNNNNNTTNNNNNNNTTN
NNTNTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTNNTTTTNNTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTT
TTTTTNTTTTNTTTTTTTTTTTNTTTTTNTTTTTNNNTTTTTTTTTTTTT
TTTTTTTTTTTNTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTNTT
TTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTT
TTTNTTTTTTNTTTTTTTTTTTNTTNTNTNNNTTTTNTNTTTTTTNNTTT
TTTTTTTTTTTNNTTTTTTNTTNTTNTTTTTTTTTTTTTTNTTTTTTTTN
NTTTTTTTTTTNTT

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATGACACAAACTATGCAAAGTT
CTCAGGTAAGTGCTTACCATATAGTGTGAGTTCAACCCACAGTGGCAATT
GTCACCTCTTCCTTCTTCCCTCAACCCATTTCCTTCTAGCAGGTTCACCC
TTCTACAGTCTGGCTCTGCTGCTCAGCTCTGCCTCATCTCCAAAGAGGAA
TCATGCAAATGTGGTGAAAAGCCATTTTCCTGTTTGTAAGACAGGAATAA
CCGTACTACCTTAGAAGGTTATGGGGTTCATATCATTTAACACCAGTGGC
TCATTTTAATTAAAAACCTTAGTCAATATGAGTACTTGGTAAATGAATGG
AAACTCACACGTGTTTTCCAGGTTTATGAATGAATGGTCCTGGTATTTGT
TTCCAGTCTTTGCTTTTCATCTGGCAGTTTCTGCTGCAGGACAGTTTGGT
AGGTGGTGCAGACAGTTTTTGCCTGGGTTAGTAGTAGGTGGACAGAGGTA
GAAGCTCTGTGGAGGGCAGTGTTGCCAAAGGGGAAACTGGTTGGNTGGAC
TTTCTGAAAAACCTGGGGAACAAAGGGGAATTCATTCTTGGATTTTTACC
CCACTAAAGAAAAACTCCCACTGTTTCCCAAAAAAAAAATAATTCAGGGT
TAAAAAAAATTTTCTTTCTTCCCAAGGCAAAAGAAATATCCACAGGGTTC
TCCTTAAAACCCGGGGGAAAATTCCCTTTTGTGGTTTTTATAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_l24.g1 MSMg01no436_l24.g1 CHROMAT_FILE:
MSMg01no436_l24.g1 PHD_FILE: MSMg01no436_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:55 2005
         (427 letters)



>mm_chr3_146214671_146215497
          Length = 827

 Score =  779 bits (403), Expect = 0.0
 Identities = 421/427 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgacacaaactatgcaaagttctcaggtaagtgcttaccatatagtgtgagttcaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgacacaaactatgcaaagttctcaggtaagtgcttaccatatagtgtgagttcaacc 260

                                                                       
Query: 61  cacagtggcaattgtcacctcttccttcttccctcaacccatttccttctagcaggttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacagtggcaattgtcacctcttccttcttccctcaacccatttccttctagcaggttca 320

                                                                       
Query: 121 cccttctacagtctggctctgctgctcagctctgcctcatctccaaagaggaatcatgca 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctcctacagtctggctctgctgctcagctctgcctcatctccaaagaggaatcatgca 380

                                                                       
Query: 181 aatgtggtgaaaagccattttcctgtttgtaagacaggaataaccgtactaccttagaag 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 aatgtggtgaaaagccattttcctgtttgtaagacaggaataatcgtactaccttagaag 440

                                                                       
Query: 241 gttatggggttcatatcatttaacaccagtggctcattttaattaaaaaccttagtcaat 300
           |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 gttatggggttcatgtcatttaacaccagcggctcattttaattaaaaaccttagtcaat 500

                                                                       
Query: 301 atgagtacttggtaaatgaatggaaactcacacgtgttttccaggtttatgaatgaatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgagtacttggtaaatgaatggaaactcacacgtgttttccaggtttatgaatgaatgg 560

                                                                       
Query: 361 tcctggtatttgtttccagtctttgcttttcatctggcagtttctgctgcaggacagttt 420
           ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 tcctggtatttgtttcccgtctttgcttttcatctggcagtttctgccgcaggacagttt 620

                  
Query: 421 ggtaggt 427
           |||||||
Sbjct: 621 ggtaggt 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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