GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTCCTCTCTTCAACTGCAGCTGTACAGGATTTATGGGGAGGGG
CTTTCTTGAGGGGCCTAGTGACTTATGCATGCTAAGCAAACTTGCTACCC
CTGAGCTATCTCTCCAGCCCAGTGCCAACAACTTTCAGGAACATTTAGGG
GCTGAAGTGGAAGACAGGATTCTCTAAGAAGTTGTAATACACCTGGAAGG
ACATGACAGTCAGAAGTGATGCATTTGCTGAGGAGAGGAGGGACAGTAAG
GGACAGTGAGGGGGTGCAGAGTACTCTGAGTAGGGAGTAAACAAACACCT
CAGGAAATAAAGCTTGTGGATGTCTTCAAGTATAAGTTTTAGAAATCAGA
TTATAAACTTCATCCAACAGATGAAATGCATTTAATCTGAACAGCTGTTT
GCCCAGAGCTTCCTAATTTAGAAAATGGAATGTTTTGGCCTTTGGAGAGT
TAGTATTAAGTGTGAGGTGACTGGAGACTATGGCGAGCGATGTCTTAAAC
ACGTGGGTTTCTGTGGTTCAATGATTACAAATATTGGGTTTAACAGCATG
CTGTTTTCCATTGCCAGGATGGATTCCTGGCCCTTCTTTCAATTCCCCCC
CTTTCCTCCTAAAACAAATTGGTACCACGAAAAGGGGGTATTCCTGTTTC
ATACCCGGCCCTGTTGTTTTTTTGCGAATTGGGGAAAGAACCAGCCTACA
TGCGCCCTTTTTTTCTCTCCCTGTTN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAAAAATTCATTCTATCGAAAAATT
CCCTAGCCTCAGTCATAAAGACTTAAAGAAGCATTTCTTCCGTTTAAATC
GCAAGGCCGTTTTGGTTTCCTAGTAGGCAGGAGAGCTAGCGAATAAGAGG
AACATTGCAGAGCGTCAAGGCACTTTCAGGGCCAAGCTCGTCCCTGTTGG
AGAAAGAGTTCTAAAGCATTATCTGAGAACAAACTTTAAGATCACAGTTT
TGTTTAGCTTATCTGCTGAAAATCCTGTGGGGCATCTCAAAAGAGCCACA
ATTAGTGCAAAAGAAAGGCGTCGGTCGACATTAAGTCCTTTCCGGTATTC
CCAGAACTCAGGTGGCTGTGAAATCACGTGCACAGCTTCCTACTTTGCTT
TCTGAAGGCAGCACATACAAAAATAGGTTGACATTAGGTTTAAACCACAT
ATATATTATAAGCTTTATTGTAACTGCAAAAATAGTTTAGCCACATTTAA
GGGAAAATAAACTTACTGAGACTACAAACTGCATATGTTAGAAGCCAGAT
GTAAGAACACTGATTATTTTCCTTGTAAGTGGATACATGCCCCAAACTTC
CCACAGTCACTCTGTAGAAATGAACAGACCGAAGACGCTGTTCTGTGGAG
AATCTCCGTCCGCTCACACCCTCTGTCTGCTAAGGCTTTGGGGCAGGGGA
CTCCCAGGATTTTCCTTATTN

Query= MSMg01no436_n22.b1 MSMg01no436_n22.b1 CHROMAT_FILE:
MSMg01no436_n22.b1 PHD_FILE: MSMg01no436_n22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:03 2005
         (205 letters)



>mm_chr3_54778647_54779251
          Length = 605

 Score =  377 bits (195), Expect = e-109
 Identities = 201/203 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggagtaaacaaacacctcaggaaataaagcttgtggatgtcttcaagtataagtttta 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 agggagtaaacaaacacctcaggaaataaagctcgtggatgtcttcaagtataagtttta 260

                                                                       
Query: 61  gaaatcagattataaacttcatccaacagatgaaatgcatttaatctgaacagctgtttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaatcagattataaacttcatccaacagatgaaatgcatttaatctgaacagctgtttg 320

                                                                       
Query: 121 cccagagcttcctaatttagaaaatggaatgttttggcctttggagagttagtattaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 cccagagcttcctaatttagaaaatggaatgttttggcctttggagagttagtatcaagt 380

                                  
Query: 181 gtgaggtgactggagactatggc 203
           |||||||||||||||||||||||
Sbjct: 381 gtgaggtgactggagactatggc 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 605
Length adjustment: 8
Effective length of query: 197
Effective length of database: 597
Effective search space:   117609
Effective search space used:   117609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no436_n22.g1 MSMg01no436_n22.g1 CHROMAT_FILE:
MSMg01no436_n22.g1 PHD_FILE: MSMg01no436_n22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:03 2005
         (552 letters)



>mm_chr3_54939542_54940493
          Length = 952

 Score =  998 bits (516), Expect = 0.0
 Identities = 543/552 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaaaattcattctatcgaaaaattccctagcctcagtcataaagacttaaagaagcat 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ataaaaattcattctatcaaaaaattccctagcctcagtcataaagacttaaagaagcat 693

                                                                       
Query: 61  ttcttccgtttaaatcgcaaggccgttttggtttcctagtaggcaggagagctagcgaat 120
           |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 692 ttcttccgtttaaatcgcaaggccattttggtttcctagtaggcagaagagctagcgaat 633

                                                                       
Query: 121 aagaggaacattgcagagcgtcaaggcactttcagggccaagctcgtccctgttggagaa 180
           |||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||
Sbjct: 632 aagaggaacattgcagagcgtcaaggcactttcatgaccaagctcatccctgttggagaa 573

                                                                       
Query: 181 agagttctaaagcattatctgagaacaaactttaagatcacagttttgtttagcttatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 agagttctaaagcattatctgagaacaaactttaagatcacagttttgtttagcttatct 513

                                                                       
Query: 241 gctgaaaatcctgtggggcatctcaaaagagccacaattagtgcaaaagaaaggcgtcgg 300
           |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 512 gctgaaaatcctgttgggcatctcaaaagagccacaattagtgcaaaaggaaggcgtcag 453

                                                                       
Query: 301 tcgacattaagtcctttccggtattcccagaactcaggtggctgtgaaatcacgtgcaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tcgacattaagtcctttccggtattcccagaactcaggtggctgtgaaatcacgtgcaca 393

                                                                       
Query: 361 gcttcctactttgctttctgaaggcagcacatacaaaaataggttgacattaggtttaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gcttcctactttgctttctgaaggcagcacatacaaaaataggttgacattaggtttaaa 333

                                                                       
Query: 421 ccacatatatattataagctttattgtaactgcaaaaatagtttagccacatttaaggga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ccacatatatattataagctttattgtaactgcaaaaatagtttagccacatttaaggga 273

                                                                       
Query: 481 aaataaacttactgagactacaaactgcatatgttagaagccagatgtaagaacactgat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaataaacttactgagactacaaactgcatatgttagaagccagatgtaagaacactgat 213

                       
Query: 541 tattttccttgt 552
           ||||||||||||
Sbjct: 212 tattttccttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)