NCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTAGCATTACGAGTACTCTAATAATATGCTGAGGTTGGTCCA
CAACACAACAATCATGAAAATTGGCAATAAAAAGAATGTTTGGAAGTCAA
AATATTTCCATCCTCTATACATGTTTCAAAAAATGACTTATAAAAACATA
TGGTCATGAATAAAAGTCTACACATCCATATAACATATAGCCACATGATA
TGTCTTCCAGTTTTGGAAACCATTCACTAAGATGCCATACATTCTCCCTC
TGTGTTCACTCATATTTAACCAACTGACTTGAAATTATTTATTTATTTTA
GTGAATTGAGGGCAGTGAGATGGCGGTCACACTCAAAGTCTGGGGACATT
GGTTTGATCCCCAGAATCTATGAAAGGTAGAAGGAGAGAACTGACTCCCC
ACATGTGCCATGTCTGCACCCACGTACCTCCCCACACAAACACATTTTGT
TGTGCATACACAGTAGTAATAAATATTACGTTTTANAAAGTGAATTGACA
TGAAAGAAAGAAAGAGTTAACCAAAACATATTATAGTTAGTCAGCTACTT
ATTTAACACTAATTTCCCCTCTGTGTATTTTTAGGACCATTCCTGTGTAT
ATATTTTGTTACTCACCACAGNATATGTATTTGTTTTCTCACTTAGNCAC
ACCCTTGCTAACTTGTGCTAAATTGGAAAGCTATTTATAGTAAAAATTAA
GGAAAATATTN

NNCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTGGCACAGGAAAAGACTTTCTGA
ACAGACCACCAGTAGCACAGGCACTAATATAAACCACTAATAGATGAGAC
CTCATGAAACTGAAAAGCATTGGTATGGTAAAGACACCATCATTCGAACA
AAGTGTCAGTCTACAGAAAAAAAGAATTTTACAAATTATACATCCAATAG
AGGTTTAGTATCTGAACTATAACAAGAACTAAAACCAACCAAACAAAAAA
CACTGAACAACAAGAAAATAAATAACCCTGCTAAAAGTAGATTAGAGATT
AAGTAGAGAGTTTTCAAAAGATGAAACACACATGGCAAAGAAACATTAAA
CATGTATTCAAGATCTTTGCCATCAAAGAAATAAAAGTAACAGCTACTTT
GAAATTTCATCAATTTACACCAATCAGAATGGACACAATCTATAAAACAA
ATAACAGCTCATGCTGGTGAGGCTATGGGGTACAGGAACAATCATCCAAT
GCTGGTGAGATTGCAAACATGTGCAACCACAATGAAAATCAGGGTGGCTG
TTTCTCAGGAAGCTGGGATTTCATCTTCCTCAGATCAAACTACTCTTGGG
CATATACCCAAATAATTCTCAGTCAGCCCCAGAAAGGCTGGCTCTCCATG
TTCACTGGGGGTCTATTCTTAAATCCCGGATTATTGGCCGCTTTGATTTC
ATGAAACACCAAG

Query= MSMg01no436_p08.b1 MSMg01no436_p08.b1 CHROMAT_FILE:
MSMg01no436_p08.b1 PHD_FILE: MSMg01no436_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:10 2005
         (578 letters)



>mm_chr3_65327515_65328492
          Length = 978

 Score = 1065 bits (551), Expect = 0.0
 Identities = 568/574 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattagcattacgagtactctaataatatgctgaggttggtccacaacacaacaa 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattagcattaggagtactctaataatatgctgaggttggtccacaacacaacaa 264

                                                                       
Query: 65  tcatgaaaattggcaataaaaagaatgtttggaagtcaaaatatttccatcctctataca 124
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 tcatgaaaattggcaataaaaagaatgcttggaagtcaaaatatttccatcctctataca 324

                                                                       
Query: 125 tgtttcaaaaaatgacttataaaaacatatggtcatgaataaaagtctacacatccatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtttcaaaaaatgacttataaaaacatatggtcatgaataaaagtctacacatccatat 384

                                                                       
Query: 185 aacatatagccacatgatatgtcttccagttttggaaaccattcactaagatgccataca 244
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 385 aacatatagccacatgatatgtctttcagttttggaaaccattcactaagatgccataca 444

                                                                       
Query: 245 ttctccctctgtgttcactcatatttaaccaactgacttgaaattatttatttattttag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttctccctctgtgttcactcatatttaaccaactgacttgaaattatttatttattttag 504

                                                                       
Query: 305 tgaattgagggcagtgagatggcggtcacactcaaagtctggggacattggtttgatccc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgaattgagggcagtgagatggcggtcacactcaaagtctggggacattggtttgatccc 564

                                                                       
Query: 365 cagaatctatgaaaggtagaaggagagaactgactccccacatgtgccatgtctgcaccc 424
            |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagaatctatgaaaggtggaaggagagaactgactccccacatgtgccatgtctgcaccc 624

                                                                       
Query: 425 acgtacctccccacacaaacacattttgttgtgcatacacagtagtaataaatattacgt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acgtacctccccacacaaacacattttgttgtgcatacacagtagtaataaatattacgt 684

                                                                       
Query: 485 tttanaaagtgaattgacatgaaagaaagaaagagttaaccaaaacatattatagttagt 544
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttaaaaagtgaattgacatgaaagaaagaaagagttaaccaaaacatattatagttagt 744

                                             
Query: 545 cagctacttatttaacactaatttcccctctgtg 578
           ||||||||||||||||||||||||||||||||||
Sbjct: 745 cagctacttatttaacactaatttcccctctgtg 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)