BAC Information

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BAC

Clone NameMSMg01-437L23
Chromosome3 (Build37)
Map Location 156,562,646 - 156,562,754
singlet/doubletsinglet
Overlap geneNegr1
Upstream geneLOC624519, LOC100040901, 4930570G19Rik, LOC100041152, LOC668853
Downstream geneLOC546818, Zranb2, Ptger3, LOC433686, LOC624684, Cth
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437L23.T7 (MSMg01no437_l23.b1)MSMg01-437L23.TJ (MSMg01no437_l23.g1)
ACCAG528506AG528507
length803770
length of high quality
(start - end)
113 (51 - 163)271 (84 - 354)
definitionCHROMAT_FILE: MSMg01no437_l23.b1 PHD_FILE: MSMg01no437_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:14 2005CHROMAT_FILE: MSMg01no437_l23.g1 PHD_FILE: MSMg01no437_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAAGGACTTTCCAAACGTTTGCAAAAGAGAAGCAAGGGGC
ATCTTAGGATTGAACAGGAAAAAATAAACAAAAGAGTGAACAAAGTGTCT
TTGTACCCACTGATGNCGNCTTGGTGAAAATAGGTTTTAAACATATTAAA
ACGGAGAACAGCAGNNNNNNCTNNNNNACGNNNNANNNANTGNNANATTT
GTTTTTGGNNNNTGGGGTTTTGGGNNACTGTGGGGNCNNAAAAAAAAANN
TTCTCCTNNACCCGGGGNNGGTGNNNNNTTCCCACCCCAACACCCCCGTG
GGGGGNNNNNNNNNNNNCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTNCCNNNNNNNNNNNGNGGA
AAAAAAAAAACCCGGGAAAAAAAACAAAAACCTCCTTGTGGGAACCCCCC
CCCCGGGGAAAACCCCCAAGATTTTTTTTTTTTTTCCCCGCCCCCCCCCC
CCCTTTTTGGGGGGAAAAAAACAGCTACCCCCCCCCCCCNCCCTTGTGTG
GTTTTTGGGGAATATTTCTAAAGACGCTTTATTTATTTTTCTTTTCCCAT
TTTCCCTATTTCTTTTTTTTTCTCTCATATCATTCTCTTTTTTTCCCCCC
TCCCCATCTCTCCTTCCTTTTTTCTTCCTCACCTCCCCACATTTTTTCCC
CTTTTCTTCCCACTTATCCCTACCCTTCTCCCTCCTTGCTCGCTCTGGAG
TGT
AAAAAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTGAAAATACTGGTA
TAAGGATGGTAGCAGAAGTACTTGGTGTTCTTATGGGAGTTCTAACAGTG
GGAGTGTTGGGTGTCTCTGACTCTTTTGCCTGTTCTTGGGGCCCTTTCCC
TCCTAATGGGTTGCCTATTCCAACCTTGATATGAGGCTTTGTGCCTGGTC
TTATTATATCTTGTTATGCTCAGTTAGATTGATATTTCTGGGATGTCTAT
TCTTTTTTGAGGGAAATGGGGAACATTGGATCTGGTGAAGAGGAGAGGTA
GGGGAGNNNNNNNNNNNNTTTTTTTTTTTTNTTNNTTTGGGTGGGGGGGG
GTTGTTTTTTTTTTTTTTGTTTGTGGCCNNNNNGTTTTGNNGTTTTGTTT
GTNTGTTTTTTGTTTGTGGTTTNTTTGTTTTTTTTTTTTTGGTTTTTTGT
TTTGGTGTTTTTTTTTTTTTTTTTTTTTTGTGTTTTTTTTTTGTTNTTTT
TTTTGTTTTTTTGTTTTTGTTTTTGTTGTGTTTTTTGTTTTGTGTTTTTG
GTTTGTGTTTGTTTTTTTTTTTTTTGGGGTTTTTTTGTGTTTTTTTNGTT
TTTTTTTTTTGGTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTGTGTTTTTTTTTTTGGTTTTTTTTTTTTGTTGTTTTTTTGTTTT
TGTTTTTTTTTTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_l23.b1 MSMg01no437_l23.b1 CHROMAT_FILE:
MSMg01no437_l23.b1 PHD_FILE: MSMg01no437_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:14 2005
         (113 letters)



>mm_chr3_156562442_156562954
          Length = 513

 Score =  195 bits (101), Expect = 5e-55
 Identities = 107/109 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaaggactttccaaacgtttgcaaaagagaagcaaggggcatcttaggattgaa 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaggactttttaaacgtttgcaaaagagaagcaaggggcatcttaggattgaa 264

                                                            
Query: 65  caggaaaaaataaacaaaagagtgaacaaagtgtctttgtacccactga 113
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caggaaaaaataaacaaaagagtgaacaaagtgtctttgtacccactga 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 113
Length of database: 513
Length adjustment: 8
Effective length of query: 105
Effective length of database: 505
Effective search space:    53025
Effective search space used:    53025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)