TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTAAAATTCCCANAACAACAGCAGAAGGACGCACAAAATGAAGA
AAACCATCTCCACTTCCCTGGGATTTGGTGTGGTTGAACTTTCCAGAATG
TGTTCTCAGTCATGTTCAAATGCCCAGTTCTGCGGTTTGCAGGGACAAGT
CTCTCTCACCTGAGCTCTTCGGAAGGCTGTGTTAGCTGGATGGAGGGCTA
CTTCTCTATGACACGGTAGAGTTGAATACTTTGGGAAAGACAATGTGATG
AAGTCCTATGGCCTGGGTATTACTCTTTTTCCAAATATAAAGTTTTAGGT
TATCAAACCTTATGTCAAAATTAACTCTCCAAACCTTTATCTCTAGAAAG
TATGTAATAAGCCTTGCTATCCCTCAGACCTTCAAGACTCACTTCCATCT
TGTTCTCAACAGTCCATTCTGTCACCCATATTTTGAACATGATCATGTAT
ACATATGACTTTTCTTGCTGTCTTTGTACACTCGTAACATAAATATTTCT
CAAGTCCTTTCAGGCTATGCACAGTGTTATCCATGTTGCTAGCTGTTCAG
TTGAACAGTGTGTCAAGATGACCCTTCCTTTTTGATTGTCACTATTGATA
TACATACCTCCCATTTTAACATCCTTCAGGTTCTTCTTTGTTTTATTTTA
TTGAACAGAATCCTATTCTCTAGCCCAGGTCATCCCTTAACTTTCTGT

GAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCCTGTCTTGATGTTTAAATAGGTCT
TTCACTCATATTTAATAGGCTAAATTTTTGGAGAATATGCATTCACATAA
AACATTCTAGGCCTAAATGTTCATCTTAGCATGTTAAAAGCAGGGTTCAC
ATTGTCACTGGTGCCCTGTCTCAGGATGGGGAAGTTGTGGCTCGTGACAT
TAAATCCTAATTTCTATAATTCTGTTCTCTGGAAGAAACTGAATAAAGGA
ACTGTGGTTAAGAGCACACATTCTTTATGAATAAATTATAGCCATAGTTA
CACCAGGAATAATGTGCAGGAATATATATGAGAGTCTCTACATCAACAAT
CAGAAGAAATTCAAAGCGCTATTAAATTTGTAACTTAGCGAGCATTTAGA
TTTTCAGCATAGTCACACCTCACCAATAACATTTACGTAAACATTCAAAA
AAAACAATAACAACCTTCAAACACACTGAAATCTGAAACACTTCTGGTCC
TAAGCATTTGGGGCAAGAGAGATTCAAACTGTACACATAAAATAAGATTT
TAGCTGTTTACACATACGTATGTGTCAGAATGATAATACAAAAAACATCA
AAGCTTACAGCATGCACACCTCTCTCAATCACAGCACTGGCTGTTTGCGT
TGCTATGACTGAAGGAGATATAATTAATACGAAAGTAATTTTTAAAAAGT
C

Query= MSMg01no437_o13.b1 MSMg01no437_o13.b1 CHROMAT_FILE:
MSMg01no437_o13.b1 PHD_FILE: MSMg01no437_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:28 2005
         (244 letters)



>mm_chr3_58753572_58754215
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagcagaaggacgcacaaaatgaagaaaaccatctccacttccctgggatttggtgtggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 cagcagaaggacgcacaaaatgaagaaaaccatctccacttccctgggatttggtatggt 260

                                                                       
Query: 61  tgaactttccagaatgtgttctcagtcatgttcaaatgcccagttctgcggtttgcaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaactttccagaatgtgttctcagtcatgttcaaatgcccagttctgcggtttgcaggg 320

                                                                       
Query: 121 acaagtctctctcacctgagctcttcggaaggctgtgttagctggatggagggctacttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaagtctctctcacctgagctcttcggaaggctgtgttagctggatggagggctacttc 380

                                                                       
Query: 181 tctatgacacggtagagttgaatactttgggaaagacaatgtgatgaagtcctatggcct 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctaggacacggtagagttgaatactttgggaaagacaatgtgatgaagtcctatggcct 440

               
Query: 241 gggt 244
           ||||
Sbjct: 441 gggt 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no437_o13.g1 MSMg01no437_o13.g1 CHROMAT_FILE:
MSMg01no437_o13.g1 PHD_FILE: MSMg01no437_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:28 2005
         (553 letters)



>mm_chr3_58930616_58931568
          Length = 953

 Score = 1015 bits (525), Expect = 0.0
 Identities = 546/553 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcctgtcttgatgtttaaataggtctttcactcatatttaataggctaaatttttggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ctcctgtcttgatgtttaaataggtctttcactcatatttaataggctaaatttttggag 593

                                                                       
Query: 61  aatatgcattcacataaaacattctaggcctaaatgttcatcttagcatgttaaaagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aatatgcattcacataaaacattctaggcctaaatgttcatcttagcatgttaaaagcag 533

                                                                       
Query: 121 ggttcacattgtcactggtgccctgtctcaggatggggaagttgtggctcgtgacattaa 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 532 ggttcacattgtcactggtgccctgtctcagtatggggaagttgtggctcgtgacattaa 473

                                                                       
Query: 181 atcctaatttctataattctgttctctggaagaaactgaataaaggaactgtggttaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 atcctaatttctataattctgttctctggaagaaactgaataaaggaactgtggttaaga 413

                                                                       
Query: 241 gcacacattctttatgaataaattatagccatagttacaccaggaataatgtgcaggaat 300
           |||||||  |   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gcacacaacccagatgaataaattatagccatagttacaccaggaataatgtgcaggaat 353

                                                                       
Query: 301 atatatgagagtctctacatcaacaatcagaagaaattcaaagcgctattaaatttgtaa 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 352 atatatgagagtctctacatcaacaatcagaagaaattcaaagtgctattaaatttgtaa 293

                                                                       
Query: 361 cttagcgagcatttagattttcagcatagtcacacctcaccaataacatttacgtaaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cttagcgagcatttagattttcagcatagtcacacctcaccaataacatttacgtaaaca 233

                                                                       
Query: 421 ttcaaaaaaaacaataacaaccttcaaacacactgaaatctgaaacacttctggtcctaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 ttcaaaaaaaacaataacaaccttcaaacacactgaaatctgaaacacttctggtcctaa 173

                                                                       
Query: 481 gcatttggggcaagagagattcaaactgtacacataaaataagattttagctgtttacac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 gcatttggggcaagagagattcaaactgtacacataaaataagattttagctgtttacac 113

                        
Query: 541 atacgtatgtgtc 553
           |||||||||||||
Sbjct: 112 atacgtatgtgtc 100


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)