BAC Information

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BAC

Clone NameMSMg01-439D18
Chromosome3 (Build37)
Map Location 149,893,193 - 149,893,704
singlet/doubletsinglet
Overlap genenone
Upstream geneEG381483, LOC100040620, LOC100040633
Downstream geneLOC100040455, LOC100040463, LOC623554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439D18.T7 (MSMg01no439_d18.b1)MSMg01-439D18.TJ (MSMg01no439_d18.g1)
ACCAG529638AG529639
length763734
length of high quality
(start - end)		513 (41 - 553)503 (67 - 569)
definitionCHROMAT_FILE: MSMg01no439_d18.b1 PHD_FILE: MSMg01no439_d18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:18 2005CHROMAT_FILE: MSMg01no439_d18.g1 PHD_FILE: MSMg01no439_d18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATT
CCCTGACAATTACCAGTATTGAAACATTACCTTGACAGTCATGCCTATGA
TTTATAAGAAAATAAAATCATTATTTAAAGTATTATATTATTTTTCATAC
ATATATATGATATTATTTTGATATTATTATTCCCATCATATATGTTTACT
CTTTATAAATACTCAGGTACACAAATCTTGAAAACCTGGATATTATATCT
AATGTCTATTGAAAGATTTAAGAAGTGTAAGAGGCCTTTTATTAAGAAAA
GCTGAACCATAAACAATTGTTTTACTAAAACATTTATTTTTATCGTTTTA
AATGAAAAGATAGTTATTTCATTTTTGTGTAGTGAAATAATTTCCTACAC
ATGAAGGTATTTTCTAAATGTGAATAAACTTTACATACCTTTTAAAAATT
CAGCTCACATCAAAAAAAGCTAAATAACATTCAGATTTCTGTGAGTTCTC
TCCATGACTTTTACAAGCTTAAAGTTTGGCCCAATGATTTAGAGTTAATA
ATTTAACATGTTAATAATATTTTATATTGTGGATTGTTGAACATCAGCTT
TGTAGATTATTTTAAATGAATATTTAATTTTTATTCACCTTTGGCAGAAA
AAAAACAATTTGTTTAAATTGCCTGAAAAAGAAGAAAGAGAACTTTTCCC
ACGGGTATTGGTTAAAAAAACTTGGGAATAAAAAATAACTTTTCAATTCC
CCCCAATTGGGCG

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTCTTCTTCAGATCCACACCAGCCTTCAGAAAA
GAGCAGGTCTCCAAGAGACAGCAACCAAACAGGCCAAAACAAGATACAAG
TAAGTCAAGGTGAGAACCCTTATATTGAGTCTAGACAAGGCAACCCAGTA
GGAGCAGAAGAGACCAAAGACCAGAAAAAAAGTCAGGAACACACCTGCTC
CCACAGTAATACTTCCCCAAACCACCAGCTAACAGCCTTGGCATATATGC
ACGGAGGACCCTTGTAGTGGCATGCTGCTTCAGGCTCTCGGAGTGCTGAT
GAGCCCTGCTTAGTTAATTCAGTGGGACATGATCTCTTGCATTCCTCCAC
CTCCTTTGACTCCTACAATCTTTCCTACCCTGTTCTCTAGGGTTTTCCAG
AGCTCTGAAGGGAAGGACCAGATGCTTTAAGAGTTATTTAAAAGTGGAAG
TTTGATCATTTCTATTAAAAAGTAAGAAACTTCTTTAAAACACAATTCAC
ACTGAGATGGAAATTAACTATACCAAATTTGTTTTCTTCTCAAAAAAAAA
TCATAGTAATAGTCTCTGTATTACTCTTGGAGCAGCCTCTTTTTATTTAT
TATTCAGGATTGTGCTTATAACTTAGAATTGAGAAGCACACCCACCCTGA
TTTACTATGATGATTTGTCTGTACACATGTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_d18.b1 MSMg01no439_d18.b1 CHROMAT_FILE:
MSMg01no439_d18.b1 PHD_FILE: MSMg01no439_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:18 2005
         (513 letters)



>mm_chr3_149892988_149893904
          Length = 917

 Score =  940 bits (486), Expect = 0.0
 Identities = 504/512 (98%), Gaps = 4/512 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccctgacaattaccagtattgaaacattaccttgacagtcatgcctatgatttat 65
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccctgacaattacaagtattgaaacattaccttgacagtcatgcctatgatttat 265

                                                                       
Query: 66  aagaaaataaaatcattatttaaagtattatattatttttcatacatatatatgatatta 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aagaaaataaaatcattatttaaagtattatattatttttcatacatatatatgatatta 325

                                                                       
Query: 126 ttttgatattattattcccatcatatatgtttactctttataaata----ctcaggtaca 181
           ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||
Sbjct: 326 ttttgatattattattcccatcatatatgtttactctttataaataaatactcaggtaca 385

                                                                       
Query: 182 caaatcttgaaaacctggatattatatctaatgtctattgaaagatttaagaagtgtaag 241
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 386 caaatcttgaaaacctggatattatatctaatgtctattaaaagatttaagaagtgtaag 445

                                                                       
Query: 242 aggccttttattaagaaaagctgaaccataaacaattgttttactaaaacatttattttt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aggccttttattaagaaaagctgaaccataaacaattgttttactaaaacatttattttt 505

                                                                       
Query: 302 atcgttttaaatgaaaagatagttatttcatttttgtgtagtgaaataatttcctacaca 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct: 506 atcgttttaaatgaaaagatagttatttcatttttgtgtagtgaaataattacctacacg 565

                                                                       
Query: 362 tgaaggtattttctaaatgtgaataaactttacataccttttaaaaattcagctcacatc 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgaaggtattttctaaatgtgaataaactttacataccttttaaaaattcagctcacatc 625

                                                                       
Query: 422 aaaaaaagctaaataacattcagatttctgtgagttctctccatgacttttacaagctta 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aaaaaaagctaaataacattcagatttctgtgagttctctccatgacttttacaagctta 685

                                           
Query: 482 aagtttggcccaatgatttagagttaataatt 513
           ||||||||||||||||||||||||||||||||
Sbjct: 686 aagtttggcccaatgatttagagttaataatt 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 917
Length adjustment: 10
Effective length of query: 503
Effective length of database: 907
Effective search space:   456221
Effective search space used:   456221
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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