BAC Information

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BAC

Clone NameMSMg01-439F08
Chromosome3 (Build37)
Map Location 25,565,184 - 25,565,692
singlet/doubletsinglet
Overlap geneNlgn1
Upstream geneEG635702, LOC100039592
Downstream geneLOC621017, LOC229152, Spata16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439F08.T7 (MSMg01no439_f08.b1)MSMg01-439F08.TJ (MSMg01no439_f08.g1)
ACCAG529712AG529713
length740741
length of high quality
(start - end)		516 (45 - 560)---
definitionCHROMAT_FILE: MSMg01no439_f08.b1 PHD_FILE: MSMg01no439_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:25 2005CHROMAT_FILE: MSMg01no439_f08.g1 PHD_FILE: MSMg01no439_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCTTTGCCTGGTTTACAATATGGATGCCAGCTAACAGCATGGTG
GTAATCTGACAATGTCATTCTCATCATAGCCTATAACTGGCCCATTCTTC
AGTTAGAGGGAGAGGGAAGGGCCAAGATGATTATATTCTAATCCTGATCA
AAAGTCAGTTCTTCTCGATAAGTGTAGTTCCTAGATAAAGTCACTAAATT
TTAATGACATTAATTCTGCAATTATAGGGGCTGAATGGTGTATACATGTA
TCACAGGTGCTATTTCAATATAAAATATTATGTAACGCTTAAGCCTGGTA
CAACACACATTACTCAAACTCTCATTCTTTCTGTATGGAAAAATGCACAG
CACTGTTGACCTAACATTTTGAAATATATAAGATTTTATCAATACCTACA
GCCATCATGCTGTGAGTGTACTGCAAATCTTGTATTTCTATCCAAGCAAA
ACTTGATTTGCATTGTTCACCTTTGCCATGGTGTCCTCTCCAATGTTCTC
CAGCTTCAGACTTGCTTTCAAAAATGATATGTTATTCTATAAAGCTGTAT
ACATGGTGAATACTTGATTTTAAACCCCCAATGTACACCCACGTAATTAG
CTGTTTTCATGGCTTTTTAAAAAACCCAACCCAATGGCCTTCAATCTTTA
TTTAAGGCATTTTTTATTAACCCCCTGAATTGGAAAAAAG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGTCGTTAATGAAGTGTTTCACCAGAACAGT
GGCACGCACATTTATTCTGNTCTGTTCATCATACATCTAGTAACAATAGT
GGCATTGTGTGAGGGGGGAGGTGAGGTGATGTAGGCGTCGAGGTGCGAAC
TCTATGACCTTCTCTTAANTGGACTCTGACTTACAACTACTTTTGGAGGG
TTGTTCNTGTTTTTAACTGGGGAAAACCAAAAATTGGGCTTTTTTTTAAA
AAAAAAAAATTCTGGGAAAAAAAGTTTTTCTCTTTTTTTTAAGGGCCACT
TAAAATTTTTCTCTCGGGGNTATTTAAAAAAAATTTCAAAAACTTTTGGC
CCCTCCCCTCCAATTTCCCTTTATAAAAACATTTTTTTTTTTTTTTTTTT
TTTTTTTTCCTCCCCAAAAAAATTTTTTTTTTTTCCCCTCTTTTAAAATA
AAAAACAAAATCCTCCTCAAATATTTTTTTTTTTTAACAAATAACCTCCC
CCCCCCCTTCTTTTTTTCTTTTTTCTTTCATTATCCTATTTTTTTCTTTT
TCTCCCCCAATTATTACCTACCTTTCTTTCCCTCTCACCNATTTTTTTAT
CTTTTTTTTTCCCTCTTTATCCCATCTCTTTTTTTTTTTTTTTTTTCCCC
CCCCCCTCTTTTCTCCCTTTTTATTTTTATCGGTTGTGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_f08.b1 MSMg01no439_f08.b1 CHROMAT_FILE:
MSMg01no439_f08.b1 PHD_FILE: MSMg01no439_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:25 2005
         (516 letters)



>mm_chr3_25564980_25565892
          Length = 913

 Score =  959 bits (496), Expect = 0.0
 Identities = 507/512 (99%), Gaps = 3/512 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttctttgcctggtttacaatatggatgccagctaacagcatggtggtaatctg 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttctttgcatggtttacaatatggatgccagctaacagcatggtggtaatctg 264

                                                                       
Query: 65  acaatgtcattctcatcatagcctataactggcccattcttcagttagagggagagggaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acaatgtcattctcatcatagcctataactggcccattcttcagttagagggagagggaa 324

                                                                       
Query: 125 gggccaagatgattatattctaatcctgatcaaaagtcagttcttctcgataagtgtagt 184
           ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct: 325 gggccaagatgattatattctaatcctgatcaaaagtcagttct---cgataagtgtagt 381

                                                                       
Query: 185 tcctagataaagtcactaaattttaatgacattaattctgcaattataggggctgaatgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tcctagataaagtcactaaattttaatgacattaattctgcaattataggggctgaatgg 441

                                                                       
Query: 245 tgtatacatgtatcacaggtgctatttcaatataaaatattatgtaacgcttaagcctgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgtatacatgtatcacaggtgctatttcaatataaaatattatgtaacgcttaagcctgg 501

                                                                       
Query: 305 tacaacacacattactcaaactctcattctttctgtatggaaaaatgcacagcactgttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 502 tacaacacacattactcaaactctcattctttctgtatggaaaaatgcacagcactgctg 561

                                                                       
Query: 365 acctaacattttgaaatatataagattttatcaatacctacagccatcatgctgtgagtg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 acctaacattttgaaatatataagattttatcaatacctacagccatcatgctgtgagtg 621

                                                                       
Query: 425 tactgcaaatcttgtatttctatccaagcaaaacttgatttgcattgttcacctttgcca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tactgcaaatcttgtatttctatccaagcaaaacttgatttgcattgttcacctttgcca 681

                                           
Query: 485 tggtgtcctctccaatgttctccagcttcaga 516
           ||||||||||||||||||||||||||||||||
Sbjct: 682 tggtgtcctctccaatgttctccagcttcaga 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 913
Length adjustment: 10
Effective length of query: 506
Effective length of database: 903
Effective search space:   456918
Effective search space used:   456918
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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