Query= MSMg01no439_j02.b1 MSMg01no439_j02.b1 CHROMAT_FILE:
MSMg01no439_j02.b1 PHD_FILE: MSMg01no439_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:43 2005
(537 letters)
>mm_chr3_68199390_68200325
Length = 936
Score = 961 bits (497), Expect = 0.0
Identities = 524/533 (98%), Gaps = 1/533 (0%)
Strand = Plus / Minus
Query: 5 gaattcctagagagtttctggccatgattttaccaaaagtttgaaagtagaggaaggcaa 64
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 736 gaattcctagagagtttctggccatgattttaccaaaaggttgaaagtagaggaaggcag 677
Query: 65 ggagggatggtggtcctgcactgtgcccttagttacagcagaggaagatatcttgaaata 124
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 676 ggagggatggtggtcctgcactgtgcccttagttacagcagaggaagatatcctgaaata 617
Query: 125 gaaaccacctaagtcgctactctgatggatgataaaagttccttcaggtggaggccatac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gaaaccacctaagtcgctactctgatggatgataaaagttccttcaggtggaggccatac 557
Query: 185 acggtgatcagaaatctcatgtcaaattatggattcggtggtccaccatcaatgtacaaa 244
| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 556 atggtgatcagaaatctcatgtcaaattatggattcagtggtccactatcaatgtacaaa 497
Query: 245 atacgagggctttgataaacaccagagctgagtgcactttaactcacaacaacacccaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atacgagggctttgataaacaccagagctgagtgcactttaactcacaacaacacccaaa 437
Query: 305 agcaccaggtacatgtatagcatggatgaatacaggattaaaacaacagggaagaaggat 364
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 a-caccaggtacatgtatagcatggatgaatacaggattaaaacaacagggaagaaggat 378
Query: 365 caagcttatcctagatatggataactatccttctcaagagtatatgtgtatatttctcca 424
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 caagcttgtcctagatatggataactatccttctcaagagtatatgtgtatatttctcca 318
Query: 425 ctgcaagagaacactctctggacatatgtattgctggcacacaccctgcatatcatcatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 317 ctgcaagagaacactctctggacatatgtattgctggcacacaccctgcatatcaccatt 258
Query: 485 atagagctttgcctaagggcaaaggaagtgttgtatgattggatgaaatgggc 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atagagctttgcctaagggcaaaggaagtgttgtatgattggatgaaatgggc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 936
Length adjustment: 10
Effective length of query: 527
Effective length of database: 926
Effective search space: 488002
Effective search space used: 488002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_j02.g1 MSMg01no439_j02.g1 CHROMAT_FILE:
MSMg01no439_j02.g1 PHD_FILE: MSMg01no439_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:43 2005
(473 letters)
>mm_chr3_68161133_68162005
Length = 873
Score = 915 bits (473), Expect = 0.0
Identities = 473/473 (100%)
Strand = Plus / Plus
Query: 1 tgtttggctcattgacccatttattgattagaagatttgcttttaggtgtttaatttttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtttggctcattgacccatttattgattagaagatttgcttttaggtgtttaatttttg 260
Query: 61 caggtctttatgtatcctgaatattaaacctcctggaaagtttctttccattatgtagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggtctttatgtatcctgaatattaaacctcctggaaagtttctttccattatgtagtc 320
Query: 121 tagtttgctacttcttgtaatagatggcttcactgagcagggctttttaattttatgtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtttgctacttcttgtaatagatggcttcactgagcagggctttttaattttatgtaa 380
Query: 181 tcctgtttgtaaacccttgggctctttcctgtactcttcagaaagtcctgacctgtgcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctgtttgtaaacccttgggctctttcctgtactcttcagaaagtcctgacctgtgcct 440
Query: 241 gtgtcttcaagggctttccttgaacggctacacttggggttttatattaaggtctttgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtcttcaagggctttccttgaacggctacacttggggttttatattaaggtctttgat 500
Query: 301 ccatgttgaattgatttttctgtgtaaagtgagaaatgtgtatctaatctcattcttcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccatgttgaattgatttttctgtgtaaagtgagaaatgtgtatctaatctcattcttcta 560
Query: 361 catgtggataccagggttttccagcaccatttattgaaaacctgtcttttgtctggtgta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catgtggataccagggttttccagcaccatttattgaaaacctgtcttttgtctggtgta 620
Query: 421 tgcttttgacacatttgtcaaacattagaggggatttactagtgagctgtgtg 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcttttgacacatttgtcaaacattagaggggatttactagtgagctgtgtg 673
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
