TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTACACTATTTACAAAAATATGTTTAATGACATTAAAATATAAATAAA
ATGAAATGTAACAGTGGATGAACAGATTTAAGAATCAAATTGTTAATTTC
TATCATTTGGTTTGGAACTCTCTTTTCTTCTTTTTGCATGATCCTTGACT
TTGTAGGCATCTTGTAAATAGATATCTTATTAAATCTTGTTTATTAGGTT
GTATCATTGGTTAACTGGGAGGGGTTGGGATACTTTTACATTTTATCATG
TCCTTTGGCACAGGATGCTTACTATAGTGAGCCTACTTATCATGACAAAA
GCATAAATGTCAGCTCTGCAGCTTATAGCTGGCTTAGCTTCAACAAGAAT
GTCAGGCAAAGTGACAAGGCAGAAAGCAATTCTGAGTGATGACATGGCTG
TGGATAATAGATTGCTTTTCCAGGGATGCTGCTTCAGCTTTGATCTCTGA
AACCTTTCATCCCAAGGGGGAAAAAGTTCTTTGAGTATTCCACTAGAATA
TGGACTATGTATATTTCAATCTTTGTACCATACATTGTCTCAATGGTCTT
TGGATGATTAAAATGCCCAGTTCCCCTTATTTGGGCGGTCAATTTCATGG
CATTTGGGACCTGTTGTTAAATGCCCTACCTACAACCCAAAAGGCTTTGT
TTTTCACCCCCCCAAGAAATAACACCCCTCCTATCATAAACAGCCTTATT

TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTGACTGAAAACCTAATGTAAGAAAAT
ATATGTTGATTAATTCACAGACTGTGATTTTCTTTTTCTTTTTATTTATT
TATTGTTTTACACTCCAAATTTTATTCCCCTCCTTGTCTACCCTCTGACT
GCTTCACATCCTATACCTCCTCCCCACCCCCTATCTCCATGAAGATGGCC
CCAACCCCTACCCCCCGCAACGCCCCAGACCTCTAATCTACCTGGAGCCT
CCAGTCTCTTGAATGTTAGGTTCATCCTCTCTGACTGAACCTAAACCCAG
TAGTCCTCTGCTGTATATGTGTTAGGGGCCTCATATCAGCTGGTATACAC
TGCCTTGTTGGTGGCCCTATGTCTGAGAGATCTCAGGGGCCCAGGTTAAT
TGAGACTTCTTGTCCTCTTATCAGGGTCACCCTCCTACTCAGCTTCTTCC
AGCTTTTCCCTAATTCAACCACAAGGGTCTGCAGCTTCTGTCCATTTGTT
GAGTGCAAATATCTGCATCTGAAAATTTCAACTGCTTGTTGGGTCTTTCA
GAGGGCAGCCATGATAAGGCCCTTTTTGTGAACACCCCCTATCTTCCTCA
GAAATAATGCACGGGCTGGAGGGCTCCCCTTGAACTGGACCCATTTTTGG
TTTGTCCTCGGACTTTTTTTCTCAAAATACTGGGGATTTTTTCC

Query= MSMg01no439_p21.b1 MSMg01no439_p21.b1 CHROMAT_FILE:
MSMg01no439_p21.b1 PHD_FILE: MSMg01no439_p21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:15 2005
         (496 letters)



>mm_chr3_76955443_76956338
          Length = 896

 Score =  928 bits (480), Expect = 0.0
 Identities = 489/492 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttacactatttacaaaaatatgtttaatgacattaaaatataaataaaatgaa 64
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 696 gaattctttacactatttacaaaaatatgtttaatgatattaaaatataaataaaatgaa 637

                                                                       
Query: 65  atgtaacagtggatgaacagatttaagaatcaaattgttaatttctatcatttggtttgg 124
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 636 atgtaacagtggatgaacagatttaagaattaaattgttaatttctatcatttggtttgg 577

                                                                       
Query: 125 aactctcttttcttctttttgcatgatccttgactttgtaggcatcttgtaaatagatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aactctcttttcttctttttgcatgatccttgactttgtaggcatcttgtaaatagatat 517

                                                                       
Query: 185 cttattaaatcttgtttattaggttgtatcattggttaactgggaggggttgggatactt 244
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 516 cttattaaatcttgtttattaggttgtatcatcggttaactgggaggggttgggatactt 457

                                                                       
Query: 245 ttacattttatcatgtcctttggcacaggatgcttactatagtgagcctacttatcatga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ttacattttatcatgtcctttggcacaggatgcttactatagtgagcctacttatcatga 397

                                                                       
Query: 305 caaaagcataaatgtcagctctgcagcttatagctggcttagcttcaacaagaatgtcag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 caaaagcataaatgtcagctctgcagcttatagctggcttagcttcaacaagaatgtcag 337

                                                                       
Query: 365 gcaaagtgacaaggcagaaagcaattctgagtgatgacatggctgtggataatagattgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gcaaagtgacaaggcagaaagcaattctgagtgatgacatggctgtggataatagattgc 277

                                                                       
Query: 425 ttttccagggatgctgcttcagctttgatctctgaaacctttcatcccaagggggaaaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ttttccagggatgctgcttcagctttgatctctgaaacctttcatcccaagggggaaaaa 217

                       
Query: 485 gttctttgagta 496
           ||||||||||||
Sbjct: 216 gttctttgagta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)