TTTTTTTTTTTTTTNNTTTCCATTTTTTTATTTTCNNNNCNNNCGGGCTC
AGNNNNNNNGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XATAGGTGCAGAAGGAATCCCGCCGGGNAAATTCCTTTTGGNTTCCAGTT
TCCTGAAGCCCCCCATTTTTTTTAAATGGGGGGGTTTAATTTTGGAATTT
TTTCCTTGGAAGGCCCACCCTCCTTGAGTTCCTTAAAATATGTGGGAAAT
TAAGCCCCCTATCTTGAATTANGAAAGGGAAAAAACCCTTTCCCAACCCG
GTGGGGGGGCTTTTTTTGCTAAAAAGAAGAGGGGCTTTTTTGGCTTGGGA
AAAAATTTTGGGGGGTTTTTTTAAGGCCCCCCTTTTGGGAATATCCCGCG
CAAAAAAAAAAAAAAAAAACAAATTGGGTGGGTGTTTTGTAGAAAAAAAT
TTTTCTCCCCCGCGGGGCGGNAAATATTTTAAAGGGGGGTGGTTTGTTCC
CCCCCACTATTTTTNTCCCCTTCCTAAAAAAAAAAAAAAANCGCCGCCCC
CCCCCCCCCTTTTTTTTTTAAAAAAAAAAACCCCCCCCCCCCCCCCCCCN
CCCCNACNATAATTATTATTTTATANNNTTCTCTCCCCCCCCCCCCAACA
AAAAAAAAAAATAAAAGAGATTGCGGTGTCTNNNNAATTCNNNTTCCCTC
TCCTCCCTTCCTTCTCCCA

NNNCCCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGCAACTAACAAAATAGG
AGAGACAGAAGCACATTATTCTTGATGATTACATCTCAAAGCAGTAGTTT
AGCCCTTCAGAGAAGTAATCTTCATTCAGGAAACCAGCAAGAGGCTTATA
TAGCCTTTAAAGAGATTAATGAGTATTTTGGAAGAAAAGAGCATAAGTAT
GTTTTATAAACTAAATGTTCTAGTAAAGAAAACATCATTTTATTTTCAAT
AGGAACCATTTTCTTATATTAAGTTAAGCAACACAAAGCTAAAAGCATTT
ACCTTGACCATCAAGACTGTACAATGCAGTCTCAGTAAGCTAATAATTCT
CTATTTCCTCCACCAAGCTTTAATTTCTGAATATCTTTTCTTAAAAAAAA
CTGTCTACATACTAGCCATCAGTCACCTTCACTGTTAACCCTTCTCTAGT
TTTCATCTTTTTACCAACTAAATTCTTCTTTCTTTATTTGAATATGAACG
CAATGTTACCTGTTTCCCAAAATGTAGCTTCATTCTATTGTTATGTAGNT
GCAAGGTCTTCTGTTTAGAGTAATAATATGATCAACACTCCTCTTTTGAT
GACTCCTAAGCTGCCCCCTCAGTAAAGCCAGTAAGAAGCCAGGAAGTTGC
ATAGATTCTCAAATCTTTCATCTGGGTTTGGGCCCTTTTTATTAATTTAT
TTTA

Query= MSMg01no440_b05.g1 MSMg01no440_b05.g1 CHROMAT_FILE:
MSMg01no440_b05.g1 PHD_FILE: MSMg01no440_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:22 2005
         (516 letters)



>mm_chr3_43246592_43247507
          Length = 916

 Score =  890 bits (460), Expect = 0.0
 Identities = 502/516 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccagcaactaacaaaataggagagacagaagcacattattcttgatgattacatctca 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccagcaactaacaaaaaaggagagacagaagcacattattcttgatgattacatctca 260

                                                                       
Query: 61  aagcagtagtttagcccttcagagaagtaatcttcattcaggaaaccagcaagaggctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcagtagtttagcccttcagagaagtaatcttcattcaggaaaccagcaagaggctta 320

                                                                       
Query: 121 tatagcctttaaagagattaatgagtattttggaagaaaagagcataagtatgttttata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 tatagcctttaaagagattaatgagtattttggaagaaaagagcataagcatgttttata 380

                                                                       
Query: 181 aactaaatgttctagtaaagaaaacatcattttattttcaataggaaccattttcttata 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactaaatgttctagtaaagaaagcatcattttattttcaataggaaccattttcttata 440

                                                                       
Query: 241 ttaagttaagcaacacaaagctaaaagcatttaccttgaccatcaagactgtacaatgca 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 ttaagttaagcaacacaaagctaaaaggatttaccttgaccatcaagactgtacaatgca 500

                                                                       
Query: 301 gtctcagtaagctaataattctctatttcctccaccaagctttaatttctgaatatcttt 360
           |||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||
Sbjct: 501 gtctcagtaagctaataattctctctttcctccaccaaactttaatctctgaatatcttt 560

                                                                       
Query: 361 tcttaaaaaaaactgtctacatactagccatcagtcaccttcactgttaacccttctcta 420
           ||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 tcttaaaaaaaaaagtctacatactagccatcagtcaccttcactgataacccttctcta 620

                                                                       
Query: 421 gttttcatctttttaccaactaaattcttctttctttatttgaatatgaacgcaatgtta 480
           ||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 gttctcatctttttaccaaccaaattcttctttctttatttgaacatgaacgcaatgtta 680

                                               
Query: 481 cctgtttcccaaaatgtagcttcattctattgttat 516
           ||||||||||||||||||||||||||||||| ||||
Sbjct: 681 cctgtttcccaaaatgtagcttcattctatttttat 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)