BAC Information

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BAC

Clone NameMSMg01-440D22
Chromosome3 (Build37)
Map Location 56,339,263 - 56,339,662
singlet/doubletsinglet
Overlap genenone
Upstream geneDclk1, Mab21l1, 4933417G07Rik
Downstream geneLOC100040139, LOC666585, Tm4sf1, LOC383862, Tm4sf4, Wwtr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440D22.T7 (MSMg01no440_d22.b1)MSMg01-440D22.TJ (MSMg01no440_d22.g1)
ACCAG530407AG530408
length761765
length of high quality
(start - end)		463 (82 - 544)103 (86 - 188)
definitionCHROMAT_FILE: MSMg01no440_d22.b1 PHD_FILE: MSMg01no440_d22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:37 2005CHROMAT_FILE: MSMg01no440_d22.g1 PHD_FILE: MSMg01no440_d22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAG
GATCCGCGGAATTCTTAACAAATTTTACCAGTTTTGTATCGACTGCTCCT
CCCCATATAGAGAAAAACAGTCACGGCAACTGAGATTTCAGCCTCTTAGT
TCCCATTTGACAGCAACCACATGCAACTTATCCTCAGTACCCCATTCTGC
TCTGAACTCAGAGTTAACCACCCGGTGTCCTTTAGAACAAAAGAAATTTC
ACTATCTAATTTCCCATATCTGAAATCTACATTTTTTTATTAGATATTTT
CGTTATTTACATTTAAATGTTATCCCCTTTCCTGGTTTACCCTTAGAAAA
CCCCCCCCTATCCCTTCCCCCCTTCCCCTGCTCAATAACCCATCCACTCC
CACTTCTTGACCCTGACAATCCCCTATACTGGGACATGGAACCTTCACAG
GACCAAGGGCCTCTCCTCCCATTGATGACTGACTAGGCCATTCTCTGCTA
CATATGCAGCTAGAGACATGAGTCCCTCCATGTGTTCTATTTGGTTGGTG
GNTTAGTCCCAGGGAGCTCTGGGGTTACTGGTNAGGTCATATTGTTGTTC
TTCCTATGTGGNTGGAAAACCCCTTAGCTCCTTGGTCCTTTTTCTAGCCC
CCTCATTGAAGACCTTGGGTTCACTTTAATGGTTGATTGAGAGCATCATT
GTTTATATTTTTTCGCCCCCGGCCAAACTTCCCCGAAAAAAGTTAATAAA
GTTTTCTTGGG

GAANNCCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCTGACTTCCAC
AAGCTTAGGATCTAGGGCAAGAAGACAGACAATACAATTGAATATATATA
TATATATATATATATATATATATATATATATATATGAATATGAGAGGGGG
GGGTGTGGGTGTGCGAGAGAGCGAGAGAGTGTGTGTGAGAGAGAGAGAGT
GTGTGTGTGTGTGTGGAGAGAGAGAGATGTGGGGGGGGGGGGGGGGGGGG
GGGGGAGAGAGAGGGGAGGGTGGGGGGGGGGGGGGGGGTTTTATAGATAG
ATATAGAGANAGGGGTGTGGNGGGGTGGTGTGTGTGGGGGAGGGGGGGGG
GGGGGGGTGGGTGGGGGGGGGTGGGGTGGNNTATATGAAAGAAGTGGTGG
GGGGGGTTGGGGGAGAGAGGTGGAGGGGTGGGGGGGGGGGGGGGGGTGGG
GGGGGTGGTGGTGTGTGGGGGGGGTGGGGGGGGTGGGGGGGGGTTGGTGG
GGGTGGGGGTGTGGGGGGGGGTGGTGGTGGGGGGTGGGGGTTGGGGTAAG
GGGGGGGGGGGGGTGGTGGGGTGAGGTGGGGGGGGGAGAGTGTGTGTGTG
GTGGGATGGTTGTGGGGGGGGGTGGGGTGGGAGTGGGGTGGGGGGGGGTG
GGGGGGTGGGGGTGAGGGGGAGTGGGTGGTTGAGGGGGTGTTATAGGGGG
GTGGGAGGGGTGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_d22.b1 MSMg01no440_d22.b1 CHROMAT_FILE:
MSMg01no440_d22.b1 PHD_FILE: MSMg01no440_d22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:37 2005
         (463 letters)



>mm_chr3_56339263_56340125
          Length = 863

 Score =  700 bits (362), Expect = 0.0
 Identities = 392/404 (97%), Gaps = 6/404 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttgtatcgactgctcctccccatatagagaaaaacagtcacggcaactgagatttcag 60
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 400 ttttgtatcgactgctcctccccatatagagaaaaacagtcacagcaactgagattccag 341

                                                                       
Query: 61  cctcttagttcccatttgacagcaaccacatgcaacttatcctcagtaccccattctgct 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 340 cctcttagttcccatttgacagcaaccacatgtaacttatcctcagtaccccattctgct 281

                                                                       
Query: 121 ctgaactcagagttaaccacccggtgtcctttagaacaaaagaaatttcactatctaatt 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 280 ctgaactcagagttaaccacccggtgtcctttataacaaaagaaatttcactatctaatt 221

                                                                       
Query: 181 tcccatatctgaaatctacatttttttattagatattttcgttatttacatttaaatgtt 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 220 tcccatatctgaaatctaca-ttttttattagatattttcgttatttacatttaaatgtt 162

                                                                       
Query: 241 atcccctttcctggtttacccttag--aaaacccccccctatcccttccccccttcccct 298
           |||||||||||||||||||||||||  ||||   ||||||||||||||||||||||||||
Sbjct: 161 atcccctttcctggtttacccttagaaaaaa---ccccctatcccttccccccttcccct 105

                                                                       
Query: 299 gctcaataacccatccactcccacttcttgaccctgacaatcccctatactgggacatgg 358
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 gctcaataacccacccactcccacttcttgaccctgacaatcccctatactgggacatgg 45

                                                       
Query: 359 aaccttcacaggaccaagggcctctcctcccattgatgactgac 402
           | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  atccttcacaggaccaagggcctctcctcccattgatgactgac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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