Query= MSMg01no440_j04.b1 MSMg01no440_j04.b1 CHROMAT_FILE:
MSMg01no440_j04.b1 PHD_FILE: MSMg01no440_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:04 2005
(164 letters)
>mm_chr3_52711054_52711617
Length = 564
Score = 279 bits (144), Expect = 8e-80
Identities = 155/160 (96%), Gaps = 4/160 (2%)
Strand = Plus / Minus
Query: 7 gaattcttctttttggcgggttgggtggggctttacttgttgttctagacttttcctttt 66
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gaattcttctttttggggggttgggtggggctttacttgttgttctagacttttcctttt 305
Query: 67 ctcttctattagtgtcaaaccc--ggtggtgtatgctcagttggcaaagttggccaggag 124
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 304 ctcttctattagtgtcaaacccaag--ggtgtatgctcagttggcaaagttggccaggag 247
Query: 125 atattactgacccctagtggctacagcccaaagggttcat 164
||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 atattactgacccctagtggctacagcccaaagggttcat 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space: 86736
Effective search space used: 86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no440_j04.g1 MSMg01no440_j04.g1 CHROMAT_FILE:
MSMg01no440_j04.g1 PHD_FILE: MSMg01no440_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:04 2005
(600 letters)
>mm_chr3_52587350_52588351
Length = 1002
Score = 1149 bits (594), Expect = 0.0
Identities = 600/602 (99%), Gaps = 2/602 (0%)
Strand = Plus / Plus
Query: 1 tcttccacctgaaaatcatgtagactggaactcagctaaacgtaaccccttggaagcaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttccacctgaaaatcatgtagactggaactcagctaaacgtaaccccttggaagcaca 260
Query: 61 gttgagaagcaccaagacatgttgcttctgaggaggatcctagaaaattgtaggacagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgagaagcaccaagacatgttgcttctgaggaggatcctagaaaattgtaggacagta 320
Query: 121 tttataccttaaaaaaaa-cacccttcttaaaatgtctagaggcatcttatacaaaatat 179
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttataccttaaaaaaaatcacccttcttaaaatgtctagaggcatcttatacaaaatat 380
Query: 180 aggagtaccacaaaaggaactggatttggacgtgttcatactttgtaagtgacggatgca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggagtaccacaaaaggaactggatttggacgtgttcatactttgtaagtgacggatgca 440
Query: 240 gagggagacaaatttttactttattttctgcatatttttaaattactattatttgtagaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagggagacaaatttttactttattttctgcatatttttaaattactattatttgtagaa 500
Query: 300 tatgctttaaataatgaaaaaggtataagtataatgatataacctttaaagctaaatact 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatgctttaaataatgaaaaaggtataagtataatgatataacctttaaagctaaatact 560
Query: 360 acaagctgccctcgtagtctgtatagctctgagttattaatgtagctatttagcatctcc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaagctgccctcgtagtctgtatagctctgagttattaatgtagctatttagcatctcc 620
Query: 420 taacaggaagacagtcatgtatacaatagaaaccaggcaccacatagcaatttctttaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taacaggaagacagtcatgtatacaatagaaaccaggcaccacatagcaatttctttaaa 680
Query: 480 gatttaaataggaatggaaggaaaggaagaaatgtggccttaaaacagtcttctacattt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gatttaaataggaatggaaggaaaggaagaaatgtggccttaaaacagtcttctacattt 740
Query: 540 ttttt-cacaaatcactttctttaaaaaattgctttcatatgaaaccatctaattttctg 598
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttttttcacaaatcactttctttaaaaaattgctttcatatgaaaccatctaattttctg 800
Query: 599 ca 600
||
Sbjct: 801 ca 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1002
Length adjustment: 10
Effective length of query: 590
Effective length of database: 992
Effective search space: 585280
Effective search space used: 585280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
