BAC Information

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BAC

Clone NameMSMg01-440P22
Chromosome3 (Build37)
Map Location 109,697,213 - 109,697,609
singlet/doubletsinglet
Overlap geneNtng1
Upstream genePrpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3
Downstream geneLOC100043181, LOC100043183, Prmt6
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440P22.T7 (MSMg01no440_p22.b1)MSMg01-440P22.TJ (MSMg01no440_p22.g1)
ACCAG530980AG530981
length802812
length of high quality
(start - end)		405 (51 - 455)---
definitionCHROMAT_FILE: MSMg01no440_p22.b1 PHD_FILE: MSMg01no440_p22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:37 2005CHROMAT_FILE: MSMg01no440_p22.g1 PHD_FILE: MSMg01no440_p22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAAAAAANNNNCCTTCTGTCGCTATACGACTCCTATAGTTTCGAGGAT
CCGCGGAATTCATACTTCAATTTCTTCCCAAAATATTGACACAAAAGCTA
CTAAAATAAAATGAAGCCCTTCCATATTTAATAGAGAGCTTGACATGATA
AAAAATTAGCACATTGTCTCTTAGGAATGTGTTCTGATTTTAAAACTTTT
TTCCAAGAAATAACATAGCATAAGAGTGAAATGCCGATCTTAAGATGCTT
TGCTTCGTTTTGCCCATGAAAGTTGTGAACCTGTAATTTTCAGTCATTTA
GAATCCAATTTTAGTATTCCAAGAAATCTGTTTGTCAGTTACTGTACAAA
ATCTTGATTAAATATTTATAAATTTCTTAAAATGTATGTTGTTTTCTTGA
TCCATTGGATACATATATTTATTCATTAATCTTCTTTTACAAAGGGCTGC
TAAGCAAGAACAGAGACCTTTATCTGTTTTCCCTATGTCTAGCACACTAT
GGGGTGCTTAATCCATTTTATTGACATCAAGTCCCTTATATAAAATCAAC
CCTGTCTTAAAAACCCAAAATGGGAAAGGGGTCTGCGTCCCCCAAAGGGA
AACTTGGCGTATTTTAAATTGGGTTCTGGTCCTCCCCCCGCAACAAAAAA
AAAATACCTAAATTGCCCGGCCCTGGATTTTTATTTTTTTTTATTTTTCT
AAATTCCTNTCTACACAATGGTAGTTCCTGGAAAAAAGAGTTACCACTTT
AATAACATTTTTTTTCTCTGTCTATGTGCTTATGTCTTTATCTTCTTTCT
TT

NAATTTTCTATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTCCCCCTTCTCAATTGCAGTTGAGAGTAGAT
GATGATCACCGCGGTCGTCATGGTGGTACTCCTCNNNNNCNNNNNNCNNN
CNCCCNNNCNNCCCCCCCCCCCCCCCCCCCCCCCCCCGCGCCCCCGCCCN
GCGCCGCCCCGCCCCCCCCCCCCCCCCCCCCNCCGCGCCCGCCCCCGGGN
CCCGGGGGCCCCCCGCCGCGGNCGGCCGGCGCGCGCCCGCCCCCCGCGCC
CCCCCCCCCCCCCCCCCCCGCTCTTTTTTTTCCCCTCCCCCCCCCTCCCC
CCCCTCCCTTTCCCCCCCCCCCCCCCCCCCCCCGCCCTCCCCCCCCCTCT
TCCCTCGCCCCCCCCCCCCCCNNNCGCNCCCCCCCCCGGCCCCGNNCCCC
CGCNCCTCCCNNCCCCCNNNNNCCCTCCCCTCCCCCCCCCCCTGCCCTCT
CCCCCCCTCCTCTCCCCCCCTTCCTCTCCCTCCCCCCCCCCTCTCCCCCC
CCCCTCCCTCCCCCCCCCTCCCCCCCCCCCCTCCTCCCCCCCCCCTCTCC
CTCTCTCCCTCCCTCCCCCCTTCCCTTCCTCCCCCCTCCCCCCTTCCCTC
CTCCTCCCCCCCCCTCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCTCCT
CCCCCTCTCCCTCCCTCTCCCTCCCCCCCTCCCCCCGCCCCCCCCCCCCC
CCTCCCCTCCCCTCTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCTCNCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_p22.b1 MSMg01no440_p22.b1 CHROMAT_FILE:
MSMg01no440_p22.b1 PHD_FILE: MSMg01no440_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:37 2005
         (405 letters)



>mm_chr3_109697008_109697811
          Length = 804

 Score =  717 bits (371), Expect = 0.0
 Identities = 392/399 (98%), Gaps = 3/399 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcatacttcaatttcttcccaaaatattgacacaaaagctactaaaataaaatgaa 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gaattcatacttcaatttcttcccaaaatattgacacaaaagctactaaaataaaatgaa 543

                                                                       
Query: 66  gcccttccatatttaatagagagcttgacatgataaaaaattagcacattgtctcttagg 125
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 542 gcccttccatatttaatagagagcttgacatgat-aaaaattagcacattgtctcttagg 484

                                                                       
Query: 126 aatgtgttctgattttaaaacttttttccaagaaataacatagcataagagtgaaatgcc 185
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 483 aatgtgttctgattttaaaacttttttccaagaaatcacatagcataagagtgaaatgcc 424

                                                                       
Query: 186 -gatcttaagatgctttgcttcgttttgcccatgaaagttgtgaacctgtaattttcagt 244
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ag-tcttaagatgctttgcttcgttttgcccatgaaagttgtgaacctgtaattttcagt 365

                                                                       
Query: 245 catttagaatccaattttagtattccaagaaatctgtttgtcagttactgtacaaaatct 304
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 catttagaaaccaattttagtattccaagaaatctgtttgtcagttactgtacaaaatct 305

                                                                       
Query: 305 tgattaaatatttataaatttcttaaaatgtatgttgttttcttgatccattggatacat 364
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 304 tgattaaatatttataaatttcttaaaatgtatgttgttctcttgatccattggatacat 245

                                                  
Query: 365 atatttattcattaatcttcttttacaaagggctgctaa 403
           |||||||||||||| ||||||||||||||||||||||||
Sbjct: 244 atatttattcattagtcttcttttacaaagggctgctaa 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 804
Length adjustment: 9
Effective length of query: 396
Effective length of database: 795
Effective search space:   314820
Effective search space used:   314820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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