BAC Information

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BAC

Clone NameMSMg01-441F06
Chromosome3 (Build37)
Map Location 122,782,378 - 122,782,831
singlet/doubletsinglet
Overlap geneSynpo2
Upstream geneAbca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2
Downstream geneSec24d, G430022H21Rik, Prss12, EG668804, Ndst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441F06.T7 (MSMg01no441_f06.b1)MSMg01-441F06.TJ (MSMg01no441_f06.g1)
ACCAG531236AG531237
length749780
length of high quality
(start - end)
510 (51 - 560)464 (79 - 542)
definitionCHROMAT_FILE: MSMg01no441_f06.b1 PHD_FILE: MSMg01no441_f06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:04 2005CHROMAT_FILE: MSMg01no441_f06.g1 PHD_FILE: MSMg01no441_f06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATTTGTACAAACAATGTCTGTGATCTTATGTTCAACTGCC
CTATTGAACTGGGAAAGCTATCTATCACCTCTGGCTCTTATCATCTCTCT
GTTCCCTCATTCTTGAAGGTCCCTGAGCCTTGTAGGTAAGGTTGTGATAT
AGATACTCCATTTAGGGCTCAGCACTCTGAAGTCTCTTTTGGGATGCTCT
GTATTAATGACAATTTACTAACAGGAGAATGTTGAACATTCCCCTCCTCT
TCCACTTATTCTTTTTTTTTTTAATTAACTATTTTTTTCTTTTTGAGGTT
ATAATATAATCAAATTGTTTCCCCATTCCATTTCCTACCCTCATATCCTC
CCTCCAAACCCCTTGCCCCATGCTCTCTTCCAAATTCATGATCTGTTTTT
ATTATTCAATATTGAATTATTGTTGTTATTGGTGGTAGTGGTGGTCCTGT
GTGTATTCCTATATATTACAGGATCTGGGATAGTTACGAGGTTAGATGTA
GGATGAGATGGTCCTTGTAAACATTTTAAAAATGTTTCTCAGCCATTTGC
ATTTCCTCTTTCTTATTTCCATGTCCACGTTTTATCTTTTATTGTTTCCT
ACCTTGATCGCCCCACGTCTTATTAGGGCTTCTAATCCTGCCCANAACTC
TCTGACCCACATTATTTGCCTACAACACTTTTATTTTTTTTATATTTTC
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGTTTCTTGACTTGTCTCAT
CTGCACTGAGATTACGGGTGTGTGCCACCACGCCCTGCCCACTCTGACTC
TTGTCTACCTAGCAGTTCCTTAGGCATTGGCAGATAAGGAAGTGATCCAC
ACTTGTGTGTTTACACACATGTACACTCAGAGAAATGATCTGTGAGAGCC
ACAGAGGACTAAACGTGGGTTTAAGTCTATTTTTAAAAATAAAGAACCCT
ACCAAGGCTCTCTAACAACAAAATCCACACAACTGTCACACAAGCTTTCA
CGGTTGTTGTCTCCACCCCCTTGGGTGTGGGTTATAGTCATAACCACCCA
ATGGAAGACAATATTCAGACCTAGTCTCCATGGACATCGTTTTCAAATCA
TTTCTGGACTCCTGCCTATAACACACGTATGGCAACTGGGAACTATATAA
GGAGTGGCTAGACACATGGCTGTTGACTGGGGACGGGGCAGGATACTCTT
GCCTTTCCGAAAAGCTCATGTTGGTCTTCTGAGTTTTGAGGACAAAGGAC
AGTCTCTCTTTCCAGTCCTCTTGGGACCCTGGAGACACCTTTTCTCCGAA
ATGCGGAAAATACATGGGGCCCTAATGGATTCCCGGGAGTTCCTCAAGCC
TGAAAAGGCCCTTTTCCTAAAACCGAAAGGGGACCGGGCTGTTTTTTTTC
TCCAAGGGTGGTTTCTTTTGTAAACTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_f06.g1 MSMg01no441_f06.g1 CHROMAT_FILE:
MSMg01no441_f06.g1 PHD_FILE: MSMg01no441_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:04 2005
         (464 letters)



>mm_chr3_122782178_122783041
          Length = 864

 Score =  839 bits (434), Expect = 0.0
 Identities = 452/464 (97%), Gaps = 10/464 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggtttcttgacttgtctcatctgcactgagattacgggtgtgtgccaccacgccctgc 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggtttcttgacttgtctcatatgcactgagattacgggtgtgtgccaccacgccctgc 260

                                                                       
Query: 61  ccactctgactcttgtctacctagcagttccttaggcattggcagataaggaagtgatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccactctgactcttgtctacctagcagttccttaggcattggcagataaggaagtgatcc 320

                                                                       
Query: 121 acacttgtgtgtttacacacatgtacactcagagaaatgatctgtgagagccacagagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacttgtgtgtttacacacatgtacactcagagaaatgatctgtgagagccacagagga 380

                                                                       
Query: 181 ctaaacgtgggtttaagtctatttttaaaaataaagaaccctaccaaggctctctaacaa 240
           ||||||||||||||||||||||||||||||||||||||||          ||||||||||
Sbjct: 381 ctaaacgtgggtttaagtctatttttaaaaataaagaacc----------tctctaacaa 430

                                                                       
Query: 241 caaaatccacacaactgtcacacaagctttcacggttgttgtctccacccccttgggtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 caaaatccacacaactgtcacacaagctttcacggttgttgtctccacccccttgggtgt 490

                                                                       
Query: 301 gggttatagtcataaccacccaatggaagacaatattcagacctagtctccatggacatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gggttatagtcataaccacccaatggaagacaatattcagacctagtctccatggacatc 550

                                                                       
Query: 361 gttttcaaatcatttctggactcctgcctataacacacgtatggcaactgggaactatat 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 551 gttttcaaatcatttctggactcctgcctataacacacatatggcaactgggaactatat 610

                                                       
Query: 421 aaggagtggctagacacatggctgttgactggggacggggcagg 464
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aaggagtggctagacacatggctgttgactggggacggggcagg 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)