BAC Information

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BAC

Clone NameMSMg01-441F12
Chromosome3 (Build37)
Map Location 142,821,661 - 142,822,125
singlet/doubletsinglet
Overlap genenone
Upstream geneGabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883
Downstream gene1700001N15Rik, EG668889, EG621809, LOC100039938, LOC100039952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441F12.T7 (MSMg01no441_f12.b1)MSMg01-441F12.TJ (MSMg01no441_f12.g1)
ACCAG531248AG531249
length755758
length of high quality
(start - end)
546 (72 - 617)556 (79 - 634)
definitionCHROMAT_FILE: MSMg01no441_f12.b1 PHD_FILE: MSMg01no441_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:05 2005CHROMAT_FILE: MSMg01no441_f12.g1 PHD_FILE: MSMg01no441_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATGATTCCCAAGATGGGGAAATTACCAGAGTTGGTTCAGGAAC
GCACCAGGTCCATCCCGAGACAGACATCAGCTGAAGTTCTACCTAGACAT
GCTTTGGACTCTTGGTTTTTGGGGACATTTGAAGTCTCTTGAAATTAGTG
TCAAAACAGAACCAGTGTACAATAGCTCCCACAAAGGTGTGATCTTTTTT
CCCCAATGTGCAGAAACCCTGATCAAAATACTAGAGCCAGCTCCCTTGTG
AGAATCTGGAAGACTAATATTTTAAAGTGTAGACAGTGCAGCAGATTCCT
TCAACTAACAGGTCTTGTTTACAAACTCGCTTAAATTGAAAAGTTGCTTC
CTTGATTCTGTTTTAGATGCTATCTGTATGACTCATACCTCTCCCGTTTA
TGCAAATAGAGTAAGAATTCAGCAGACTGTCATCTAAGGTTGTGGTTCCC
TTTACAATGAGCCAAAACAAAAGAATTCAGTGGGTCAGACGCATGAGTAA
GGCTTTGACCCTGCTGCCATTGAAACAGTCACAGGCATTTTGCAGTTGGT
GGTTGTGGAATAGCATGTGGCTCCTGGCACTCTGGGCTCCAATTATCCCC
ATTGTGTTCACATCTGCAGCGCAAAGTAACATCCCTACTGTGACATCTGC
TCCCCGGAAAAGAGTGGTCAGACACTGCTCAGGGATTCTGTGGGGACAGT
GAGGG
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAA
GAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGG
AAATCAGTCTGGCGGTTCCTTATAAAATTGGACATAGTACTACCGGAGGA
TCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTA
AGAAGGACACATGCTCCACTATGTTCACAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATG
AATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTG
AGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGAT
AAGTGGATATTAGCCCCAAACCTAGGATACCCCAGATATAAGATATAATT
TTGCTAACCCATGAAACTCAAGAAGAATGAAGACTGAAGGGTGGACACTA
TGCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_f12.b1 MSMg01no441_f12.b1 CHROMAT_FILE:
MSMg01no441_f12.b1 PHD_FILE: MSMg01no441_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:05 2005
         (546 letters)



>mm_chr3_142821180_142822125
          Length = 946

 Score =  861 bits (445), Expect = 0.0
 Identities = 460/465 (98%)
 Strand = Plus / Minus

                                                                       
Query: 82  tttggactcttggtttttggggacatttgaagtctcttgaaattagtgtcaaaacagaac 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 tttggactcttggtttttggggacatttgaagtctcttgaaattagtgtcaaaacagaac 887

                                                                       
Query: 142 cagtgtacaatagctcccacaaaggtgtgatcttttttccccaatgtgcagaaaccctga 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 cagtgtacaatagctcccacaaaggtgtgatcttttttccccaatgtgcagaaaccctga 827

                                                                       
Query: 202 tcaaaatactagagccagctcccttgtgagaatctggaagactaatattttaaagtgtag 261
           ||||||||||||| |||||||||||||||||||||||||||||||||   ||||||||||
Sbjct: 826 tcaaaatactagaaccagctcccttgtgagaatctggaagactaatagcataaagtgtag 767

                                                                       
Query: 262 acagtgcagcagattccttcaactaacaggtcttgtttacaaactcgcttaaattgaaaa 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 acagtgcagcagattccttcaactaacaggtcttgtttacaaactcgcttaaattgaaaa 707

                                                                       
Query: 322 gttgcttccttgattctgttttagatgctatctgtatgactcatacctctcccgtttatg 381
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 706 gttgcttccttgattctgttttggatgctatctgtatgactcatacctctcccgtttatg 647

                                                                       
Query: 382 caaatagagtaagaattcagcagactgtcatctaaggttgtggttccctttacaatgagc 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 caaatagagtaagaattcagcagactgtcatctaaggttgtggttccctttacaatgagc 587

                                                                       
Query: 442 caaaacaaaagaattcagtgggtcagacgcatgagtaaggctttgaccctgctgccattg 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 caaaacaaaagaattcagtgggtcagacgcatgagtaaggctttgaccctgctgccattg 527

                                                        
Query: 502 aaacagtcacaggcattttgcagttggtggttgtggaatagcatg 546
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aaacagtcacaggcattttgcagttggtggttgtggaatagcatg 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)