Query= MSMg01no441_g13.b1 MSMg01no441_g13.b1 CHROMAT_FILE:
MSMg01no441_g13.b1 PHD_FILE: MSMg01no441_g13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:10 2005
(567 letters)
>mm_chr3_127042214_127043179
Length = 966
Score = 982 bits (508), Expect = 0.0
Identities = 550/564 (97%), Gaps = 1/564 (0%)
Strand = Plus / Minus
Query: 4 taggggtatgagttagcctacccaaagctcactggcagcaagcctggccaaaatggagac 63
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 tagggggatgaggtagcctacccaaagctcactggcagcaagcctggccaaaatggagac 707
Query: 64 ttgtctcaagatgctaagacaagagaagagtagaggaaggcacctagtgttctgttctgc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ttgtctcaagatgctaagacaagagaagagtagaggaaggcacctagtgttctgttctgc 647
Query: 124 caccacatgaacatgcaaaggcatgtgcacacacatgtgtgtgcgtgcaccacccatctg 183
||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||
Sbjct: 646 caccacatgaacatgcaaaggcacgtgcacacacatgtgtgtgtgcgcaccacccatctg 587
Query: 184 taccatgtgccacacaatacacacatgcaagtaataaagtgacatggaggtatgtggaat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 taccatgtgccacacaatacacacatgcaagtaataaagtgacatggaggtatgtggaat 527
Query: 244 ggtgtatttttagcctgctgtgtgcaaacttatgtgctgtgtctatgaatgaacacagaa 303
|||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 526 ggtgtattcacagcctgctgtgtgcaaacttat-tgctgtgtttatgaatgaacacagaa 468
Query: 304 agaacatgaatgagagaaagcagtgttggatttctatagcggaataagagatgttggtcg 363
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||
Sbjct: 467 agaacatgaatgagagaaagcagtgttggatttctatagtggaataagagctgttgatcg 408
Query: 364 ttctaaaattcacttattagagttttccaacaacagattttcagtttttgtactacactg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ttctaaaattcacttattagagttttccaacaacagattttcagtttttgtactacactg 348
Query: 424 taaaatgggccagggcatggcagtaactgagctgtccacctgagtttttctacaagccat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 taaaatgggccagggcatggcagtaactgagctgtccacctgagtttttctacaagccat 288
Query: 484 attaacatatttttgagtgtattttgatcaaaatgtcagtcaaagggcacgactccatat 543
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 attaacatatttttgtgtgtattttgatcaaaatgtcagtcaaagggcacgactccatat 228
Query: 544 tgcttgctacactaaacttgaacc 567
||||||||||||||||||||||||
Sbjct: 227 tgcttgctacactaaacttgaacc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 966
Length adjustment: 10
Effective length of query: 557
Effective length of database: 956
Effective search space: 532492
Effective search space used: 532492
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_g13.g1 MSMg01no441_g13.g1 CHROMAT_FILE:
MSMg01no441_g13.g1 PHD_FILE: MSMg01no441_g13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:10 2005
(519 letters)
>mm_chr3_126885030_126885948
Length = 919
Score = 965 bits (499), Expect = 0.0
Identities = 514/519 (99%)
Strand = Plus / Plus
Query: 1 cagtcaggtgacatgagtctgccataggttctgagaactcagttgctcctggtaatgggg 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtcagatgacatgagtctgccataggttctgagaactcagttgctcctggtaatgggg 260
Query: 61 cagtgggcagtggaagaaaaggagagattcctcagacacagcacagagctggtgagatgc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 cagtgggcagtggaagaaaaggagagattcctcagacacagcacagagctggtgagatac 320
Query: 121 ctatccagtcttacacatgaacacatggggaactgaagggctccctaaaataccagggtg 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 ctatccagtcttacacatgaacacatgggaaactgaagggctccctaaaataccagggtg 380
Query: 181 gagaatggagccattcccaaagcaagctcttctccagagggagaaagcctgtgttaaatc 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaatggagccattcccaaaacaagctcttctccagagggagaaagcctgtgttaaatc 440
Query: 241 cattttgtgtatacctaaggcaagttaggtctgagaaaatttggacttctgcatgttttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattttgtgtatacctaaggcaagttaggtctgagaaaatttggacttctgcatgttttg 500
Query: 301 agtagtctggagtctacaagaatgtatatggagtattgctcaccaacctaacggtgttag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtagtctggagtctacaagaatgtatatggagtattgctcaccaacctaacggtgttag 560
Query: 361 ggagtcttggaacttcaggagataatggggacataaagggggttaacacccttctcccag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggagtcttggaacttcaggagataatggggacataaagggggttaacacccttctcccag 620
Query: 421 taacaaacttattatgtcaagggactgtattagtgagtcaaagggagttagactttctca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taacaaacttattatgtcaagggactgtattagtgagtcaaagggagttagactttctca 680
Query: 481 ctggctctctggcttcattactcatatatgatctcctct 519
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 681 ctggctctctggcttcgttactcatatatgatctcctct 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
