Query= MSMg01no442_i13.b1 MSMg01no442_i13.b1 CHROMAT_FILE:
MSMg01no442_i13.b1 PHD_FILE: MSMg01no442_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:44 2005
(516 letters)
>mm_chr3_22509588_22510503
Length = 916
Score = 679 bits (351), Expect = 0.0
Identities = 397/415 (95%), Gaps = 11/415 (2%)
Strand = Plus / Minus
Query: 5 gaattctgtctcttc-ctcatatcaggtagacgtcaggcagcccacaactgcctataact 63
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gaattctgtctcagcactcatatcaggtagacgtcaggcagcccacaactgcctataact 349
Query: 64 cgataaatgcagctccatgtgatccagtgccctttgttggccttcacaggcattgacact 123
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 caataaatgcagctccatgtgatccagtgccctttgttggccttcacaggcattgacact 289
Query: 124 cacatgcatatccctatactcagaagtgcacatatatacataacaaaaaataaaaagatc 183
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 288 cacatgcatatccctatactcagaagtgcacatatatacataataaaaaataaaaagatc 229
Query: 184 tttttttaaaaaaagaataagagatgggctggagagaaggttctgcagatataagcaaca 243
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 228 tttttt-aaaaaaagaataagagatgggctggagag---gttctgcagatataagcaaca 173
Query: 244 gctgccc-tcctggaggacacaggttcagttccctt--cacctacataatagctcaacat 300
||||||| ||||||||||||||||||||||||| | |||||||| |||||||||| ||
Sbjct: 172 gctgcccctcctggaggacacaggttcagttcc--taacacctacacaatagctcaaaat 115
Query: 301 catctgtaattccagtatagagaatctgatatggtacacagacatcacatgcagataaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 catctgtaattccagtatagagaatctgatatggtacacagacatcacatgcagataaag 55
Query: 361 ccccacaacataaaaagaattaataagaatcctataaacatgataagttttagaa 415
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 54 ccccacaaca-aaaaagaattaataagaatcctataaacatgataaattttagaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no442_i13.g1 MSMg01no442_i13.g1 CHROMAT_FILE:
MSMg01no442_i13.g1 PHD_FILE: MSMg01no442_i13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:44 2005
(242 letters)
>mm_chr3_22389867_22390508
Length = 642
Score = 437 bits (226), Expect = e-127
Identities = 238/242 (98%)
Strand = Plus / Plus
Query: 1 ataataactggaattattgttagcctgtattttctttgaattagcatgacagagaatgga 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 ataataactggaattattgttagcctgtattttctttgaaatagcatgacagagaatgga 260
Query: 61 catcctggtatttcagctgaatttaggttgtatatttctaacattcacttctccacatgg 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 catcctggtatttcagctgaatttaggttgtgtatttctaacattcacttctccacatgg 320
Query: 121 tatactggttatttttcttgttgccatgactgaatcccaacatgaagaattgagatttgc 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 tatactggttatttttcttgttgccatgactgaatcccaacatgaagaatagagatttgc 380
Query: 181 ttgagttgttcgaggacatattccatcatggtgggaaagatgtggggacaggagtctgag 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgagttgttcgaggatatattccatcatggtgggaaagatgtggggacaggagtctgag 440
Query: 241 tg 242
||
Sbjct: 441 tg 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
