BAC Information

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BAC

Clone NameMSMg01-442L21
Chromosome3 (Build37)
Map Location 61,149,015 - 61,149,367
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1
Downstream geneRap2b, LOC666891, LOC669910, LOC676965, 4631416L12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442L21.T7 (MSMg01no442_l21.b1)MSMg01-442L21.TJ (MSMg01no442_l21.g1)
ACCAG532315AG532316
length805784
length of high quality
(start - end)
401 (48 - 448)360 (78 - 437)
definitionCHROMAT_FILE: MSMg01no442_l21.b1 PHD_FILE: MSMg01no442_l21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:03 2005CHROMAT_FILE: MSMg01no442_l21.g1 PHD_FILE: MSMg01no442_l21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGAATGTTGACTCTAGAAAATCAAGTAACCCCATTAAAAAAT
GGGGCTCAGATCTAAACAAAGAATTCACACCTGAGCAATACCAAATGGTT
GAGAAACACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAAATGCTGGAGAGGACGTGGAGAAAGAGAA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGAGATGGTACTACTGGAGGACC
CCGCAATATCTCTCCTGGGCATATATCCAGAAGATGTTACAACTAGTAAG
AAAGTAACATGCTCCACTATGTTTATAGCAGCCTCATTTACAATAGCCCG
AAGCTGGAAAGAACCCAGATGCCCCCTCATTTAGGAATGGTTACCCAATT
GTGGGACAATTTACCCTAGGGAGAACTACTTCTCTATTTATAAAAAACGG
ATCTTTTAAACCTCCCCGCATATGCCTGCGCCCCGATAGGTCCCACCCCC
ACCTTGGCACCTTCCGTTTCTTTAATACCCTCCCGCCCATTTATTTTCTG
TCCTCTCTGTCCCTTTTCCCTTTATTTCTAACCCTTTTATATCCCCTTTT
CCTCCTTTTCATTTTTCCCCCCCCTTTTTTTTTTTTCTCTCCCTATCCCT
CCCCT
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAAAGTCCACTGAGGAAAAGTGG
AGGCTGAGTGTTCAGGAAATCAGAAGCCAAGTAAGTCACTCTTCGTGTCT
TGACCACTTTGGAACCAAAGCAAATGTCTGCATTTAAACTCTGTGGGACA
AAGAAAGGGAAACAAAGGGGTTGGGCATTTCTTCAAGGAGAAGCATACAG
ACAACATCTTAATCAGAAGTTGTAGGGCCCAGGATACTAGGGTTCCACGT
GCTAAAACCAAACTCCAAGTTCTCAGGTTAGACTTCTCACAGAGTGTGTA
GTTGAAGTGTGGACCTCTGAACTGGGGTTATAGAAACCACCCTACCTGCC
TCCTCCCCTTGTGTCAGCTTTTTTATGACTTTTAGATTGTATACTGTAAA
GGGCACACAATGCATATGATGAACTTTCAGTTGCTCGTCCCTCTTAAATG
GCCATATTTCATGGATTGAACCCTAAGCACTGTATCTGCGATGACCCGGC
CCCCCCCTCCCCCTCCTTTTACTTTCTTTCCTTTCTTCTGTGAGTTCTCC
CCTTCCTTTTTTTCCCTCTTCATTTTTTTCTTTTATTCTTTTTTTCTTCC
TATTTCTCTTTTCCTCTCTTTCAATTTTTCTCTCTCGTATTCTTCTTTTT
TTCCTTTCGTATCTTTCTCTTTCTATTATTCTCTCCCCCCCCCTCCCCTT
CTCTCTTTTCTTTTCTCCCTCTCTCCCCCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_l21.g1 MSMg01no442_l21.g1 CHROMAT_FILE:
MSMg01no442_l21.g1 PHD_FILE: MSMg01no442_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:03 2005
         (360 letters)



>mm_chr3_61148809_61149567
          Length = 759

 Score =  669 bits (346), Expect = 0.0
 Identities = 352/354 (99%), Gaps = 1/354 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   ccactgaggaaaagtggaggctgagtgttcaggaaatcagaagccaagtaagtcactctt 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ccactgaggaaaagtggaggctgagtgttcaggaaatcagaagccaagtaagtcactctt 266

                                                                       
Query: 67  cgtgtcttgaccactttggaaccaaagcaaatgtctgcatttaaactctgtgggacaaag 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cgtgtcttgaccactttggaaccaaagcaaatgtctgcatttaaactctgtgggacaaag 326

                                                                       
Query: 127 aaagggaaacaaaggggttgggcatttcttcaaggagaagcatacagacaacatcttaat 186
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaagggaaacaacggg-ttgggcatttcttcaaggagaagcatacagacaacatcttaat 385

                                                                       
Query: 187 cagaagttgtagggcccaggatactagggttccacgtgctaaaaccaaactccaagttct 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cagaagttgtagggcccaggatactagggttccacgtgctaaaaccaaactccaagttct 445

                                                                       
Query: 247 caggttagacttctcacagagtgtgtagttgaagtgtggacctctgaactggggttatag 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 caggttagacttctcacagagtgtgtagttgaagtgtggacctctgaactggggttatag 505

                                                                 
Query: 307 aaaccaccctacctgcctcctccccttgtgtcagcttttttatgacttttagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aaaccaccctacctgcctcctccccttgtgtcagcttttttatgacttttagat 559


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 759
Length adjustment: 9
Effective length of query: 351
Effective length of database: 750
Effective search space:   263250
Effective search space used:   263250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)