Query= MSMg01no444_d02.b1 MSMg01no444_d02.b1 CHROMAT_FILE:
MSMg01no444_d02.b1 PHD_FILE: MSMg01no444_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:01 2005
(502 letters)
>mm_chr3_35705718_35706620
Length = 903
Score = 826 bits (427), Expect = 0.0
Identities = 483/511 (94%), Gaps = 19/511 (3%)
Strand = Plus / Plus
Query: 5 gaatt-catgtaaaagttgcgttccgataggaaatatcacaaaggttctaccagagcacc 63
||||| ||||||||||||| ||||| |||| |||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgtaaaagttgtgttccaatagaaaatatcacaaaggttctaccagagcacc 264
Query: 64 ttttccttcccttcagctacttattgtctttattcactttatatcctgaccatttccact 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttttccttcccttcagctacttattgtctttattcactttatatcctgaccatttccact 324
Query: 124 ttaggt-----cttctttctaccataatttataaatatatttatgtgtgatattgtatca 178
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 ttaggtcttaacttctttctaccataatttataaatatatttatgtgtgctattgtatca 384
Query: 179 tgaactaaaattttagacatttttagttacagaatataaaggcaaaactttggagctaaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgaactaaaattttagacatttttagttacagaatataaaggcaaaactttggagctaaa 444
Query: 239 gagatgactcagaaatcaagagcacattctgttctttcaggggactcagttccgagtgtt 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 445 gagatgactcagaaatcaagagcacattctgttctttcaggggactcagttccgagcgtt 504
Query: 299 tgcattggatatgaattcaaattcaaat------cttcctcaactccagcttcaggaatt 352
||||||||||||| ||||||||| || |||||||||||||||||||||||
Sbjct: 505 tgcattggatatg------aattcaaattcaaatctgcctcaactccagcttcaggaatt 558
Query: 353 taaagcctttggtttccacaagaacctgtagtcatgtgtgctacgcacatacagacacat 412
||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||
Sbjct: 559 taaagcctttggtttccacaagaacctgtagtcatgtgtactacccacatatagacacat 618
Query: 413 gtgtgcacacaatttttgtttgtttgtttgttt-tttgagacagggtttctctgtatagt 471
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 619 gtgtgcacacaatttttgtttgtttgtttgtttgtttgagacagggtttctctgtatagt 678
Query: 472 cctgggtgtcctggaactcactctgtagacc 502
|||||||||||||||||||||||||||||||
Sbjct: 679 cctgggtgtcctggaactcactctgtagacc 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 903
Length adjustment: 10
Effective length of query: 492
Effective length of database: 893
Effective search space: 439356
Effective search space used: 439356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no444_d02.g1 MSMg01no444_d02.g1 CHROMAT_FILE:
MSMg01no444_d02.g1 PHD_FILE: MSMg01no444_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:01 2005
(579 letters)
>mm_chr3_35876310_35877284
Length = 975
Score = 1007 bits (521), Expect = 0.0
Identities = 563/583 (96%), Gaps = 12/583 (2%)
Strand = Plus / Minus
Query: 1 cccaccgaaggtgtaattaggaccagtccctctcagacttgtatggaagccagtctcaag 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 746 cccaccgaaggtgtaattaggaccagtccctctcagacttggatggaagccagtctcaag 687
Query: 61 ggaaaaaaatccattaaagataagccagtttgaaaatggtctgtgtaataagaaataaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ggaaaaaaatccattaaagataagccagtttgaaaatggtctgtgtaataagaaataaga 627
Query: 121 cgatgcatctcctaaaccatgaggtgcatggtcaacacttttttcttttgcaaaagaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cgatgcatctcctaaaccatgaggtgcatggtcaacacttttttcttttgcaaaagaaga 567
Query: 181 caattagaactcaatccgtttatcaaaaagtttcagtttgaaacataggaagggaaggga 240
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 566 caattagaactcaatcagtttatcaaaaagtttccgtttgaaacataggaagggaaggga 507
Query: 241 tac----ttttaaacacttgcatgtgctttcggtagccaggctctgactgcagaagcttg 296
||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 506 taccggg----aaacacttgcatgtgctttcggtagccaggctctgactgcaaaagcttg 451
Query: 297 agagatttccatggtcagcgtgggtgtagagacaaactaagcccaatcgggatagacacg 356
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 agggatttccatggtcagcgtgggtgtagagacaaactaagcccaatcgggatagacacg 391
Query: 357 ggctgtggttggaaacacccaaatcacgccgaaattagttctgtctaccctggttctgta 416
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ggctgtggtttgaaacacccaaatcacgccgaaattagttctgtctaccctggttctgta 331
Query: 417 ctatggttcctgacctttcctgatagcaggttctgagggacagccttatctctgtcgtgc 476
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 330 ctatggttcctgacctttcctggtagcaggttctgagggacagccttatctctgtcgtgc 271
Query: 477 gcttacctgttcagctcagagtcatattaagttacctatcgtctttcttttctcctgtgt 536
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 270 gcttacctgttcagctcagagtcatattaagttacctatcg----tcttttctcctgtgt 215
Query: 537 ctgtgttgctttcttgtgtgtgcatgtgtgtgtgtgtgtgtgt 579
|||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 214 ctgtgttgctttcttgtgtgtgcatgcgtgtgtgtgtgtgtgt 172
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 975
Length adjustment: 10
Effective length of query: 569
Effective length of database: 965
Effective search space: 549085
Effective search space used: 549085
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
