BAC Information

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BAC

Clone NameMSMg01-444E14
Chromosome3 (Build37)
Map Location 83,241,362 - 83,241,882
singlet/doubletsinglet
Overlap genenone
Upstream geneNpy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2
Downstream gene1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444E14.T7 (MSMg01no444_e14.b1)MSMg01-444E14.TJ (MSMg01no444_e14.g1)
ACCAG533489AG533490
length771743
length of high quality
(start - end)
69 (177 - 245)521 (78 - 598)
definitionCHROMAT_FILE: MSMg01no444_e14.b1 PHD_FILE: MSMg01no444_e14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:09 2005CHROMAT_FILE: MSMg01no444_e14.g1 PHD_FILE: MSMg01no444_e14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATAATTTGCGGCGCTAAACGACTCACATAGGTACGTATCTCGCGGAAT
CAGCCAGGACTTTCGAACACTACGTTGNACTCTATGGAGGAAAGAGGTTA
CAGAAGGAATGTATATGTACACATACACACACACACACACACACACACAC
ACACACACACATTCACACACACACACACACACTCTTATTATTTCCTGAGA
CAGGTTCTTCCTGTGCAGGCTGTGTCTGGCTCCTGCCTCGCTGCTCTATT
TTTGGGATTTGGAGCTCCTGCCTTTATCCTTGGTTCTAGCTTGGAAATGC
TGAACCTGGCTGTTATTTTTTTTGCAGACAAACACAAACCCAAAGGACAC
AGGCCTGATGTTTTTTGCCTTACCAAGAGTCTAAAATTTGGAATATGGCT
TTACAGAAAATAAAAATCGCAGCCCAAGTGGATACAAGTGACTGAAGATG
ACTTTACCAGAACATATTTGAGCTACTCAGTCCACAGAGGTATCATGACA
GGCTTTCCTAGCCACCTACTGTTCGATTGCCTATTCTCCCCCTGAGTTCT
TCAGCCTCACTTTTATAACACTCCCCCGGCTACCACCTATAAAGACCTTG
CTTCGTTTGTGATTTTCAACCCCCTTCTCCCTCGTCTCCCTTTTTACTCG
CCNTACCTTCATTATTATTTTCTATAAATATAAATAACTCATTGTATGTC
TAAAATCACTTTCCTCTTGTTCTCTCCCCATTACACCCTCCCCTATCTTC
TCCATTTCCCGCTCCCCACAG
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATACTTAACCTCCTGAATTCAAA
GCAAAAACTAAAACTAAAAATAGAGTTACTGTACTAGCCAGCTGTACCAC
TCAAAGGACTATGTATACATGGTTAAGGTTTGCTTGTACTCGAAGGGCTC
TGAAGTCAACATATCACAAAGATACCCACACATCCGTGCTTGCTGTAGCA
CTGATCATAAGAGCAAAGTTATGAATGTTATGAGCTAGGTGAGCATTGGC
AACTGAGTCCAAAAAATGATGTTCATATACACAGTAGAGTTTTACTCATC
ATGAAATTATGTCATTTTTCAGGAAAATGGAGGCAACTGAAGAGCATCGT
ATTAAGCAAAAAAGACAGATACAAAGAGCTCATTCAATAGCTTTAGATGT
TATATAAACATATGAAATAATTTTTAAATGTGTCACAATAGTAGAAGTGA
ACTGTCTATAGGAACAATGAGGACTAACAGGATGACGGGGAAGGAAGGGA
GAATATATAGACAGATAGACACAATCCAGATACAGAATATACTCATAAGT
AAATATCTTCATGAAATCTATTACTATGCATAATAACTATATGCTGATAA
AAGCACCAAGCATTCTAACAAAATAGGAGAATGCAGAATTAGAGTAATCA
GTAGAGTTTGAGAGACAAATTAGAGATGCCCAGATTTTTAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_e14.g1 MSMg01no444_e14.g1 CHROMAT_FILE:
MSMg01no444_e14.g1 PHD_FILE: MSMg01no444_e14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:09 2005
         (521 letters)



>mm_chr3_83241162_83242082
          Length = 921

 Score =  961 bits (497), Expect = 0.0
 Identities = 515/521 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacttaacctcctgaattcaaagcaaaaactaaaactaaaaatagagttactgtactag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atacttaacctcctgaattcaaagcaaaaactaaaactaaaaatagagttactgtactag 260

                                                                       
Query: 61  ccagctgtaccactcaaaggactatgtatacatggttaaggtttgcttgtactcgaaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagctgtaccactcaaaggactatgtatacatggttaaggtttgcttgtactcgaaggg 320

                                                                       
Query: 121 ctctgaagtcaacatatcacaaagatacccacacatccgtgcttgctgtagcactgatca 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 ctctgaagtcaacatatcacaaagatacccacacatccatgcttgctgtagcactgatca 380

                                                                       
Query: 181 taagagcaaagttatgaatgttatgagctaggtgagcattggcaactgagtccaaaaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagagcaaagttatgaatgttatgagctaggtgagcattggcaactgagtccaaaaaat 440

                                                                       
Query: 241 gatgttcatatacacagtagagttttactcatcatgaaattatgtcatttttcaggaaaa 300
           || |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggcacatatacacagtagagttttactcatcatgaaattatgtcatttttcaggaaaa 500

                                                                       
Query: 301 tggaggcaactgaagagcatcgtattaagcaaaaaagacagatacaaagagctcattcaa 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 tggaggcaactgaagagcatcgtattaagcaaaaaagacagatacaaagagctcgttcaa 560

                                                                       
Query: 361 tagctttagatgttatataaacatatgaaataatttttaaatgtgtcacaatagtagaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagctttagatgttatataaacatatgaaataatttttaaatgtgtcacaatagtagaag 620

                                                                       
Query: 421 tgaactgtctataggaacaatgaggactaacaggatgacggggaaggaagggagaatata 480
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 tgaactgtctataggaacaatgaggactaacaggatgaaggggaaggaagggagaatata 680

                                                    
Query: 481 tagacagatagacacaatccagatacagaatatactcataa 521
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagacagatagacacaatccagatacagaatatactcataa 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)