Query= MSMg01no444_i15.b1 MSMg01no444_i15.b1 CHROMAT_FILE:
MSMg01no444_i15.b1 PHD_FILE: MSMg01no444_i15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:28 2005
(244 letters)
>mm_chr3_54481209_54481852
Length = 644
Score = 464 bits (240), Expect = e-135
Identities = 243/244 (99%)
Strand = Plus / Minus
Query: 1 atctaattggcaatataaaatagatgcaaatagaacatactgtaattaccagattattga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 atctaattggcaatataaaatagatgcaaatagaacatactgtaattaccagattattga 527
Query: 61 tttggctctttaccgtcggaatatatgcacagtgatggtgaaggttaccatttgtccttt 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 526 tttggctctttaccgtcggaatataagcacagtgatggtgaaggttaccatttgtccttt 467
Query: 121 tgctccaggttctgtaaatgtttatattcagcatttataatttaccagtcagaatgccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tgctccaggttctgtaaatgtttatattcagcatttataatttaccagtcagaatgccca 407
Query: 181 gtgtcttttgtcatttggcccacacaacaccccactgactggttctatttctgatgcagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gtgtcttttgtcatttggcccacacaacaccccactgactggttctatttctgatgcagt 347
Query: 241 ttta 244
||||
Sbjct: 346 ttta 343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no444_i15.g1 MSMg01no444_i15.g1 CHROMAT_FILE:
MSMg01no444_i15.g1 PHD_FILE: MSMg01no444_i15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:28 2005
(534 letters)
>mm_chr3_54319453_54320386
Length = 934
Score = 901 bits (466), Expect = 0.0
Identities = 523/555 (94%), Gaps = 21/555 (3%)
Strand = Plus / Plus
Query: 1 aaactagncaaataaaatttgtgctataaattgcagatttctctgatagctcgctgactt 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 aaactagtcaaataaaatttgtgctataaattgcagatttctctgatagctcgctgactt 239
Query: 61 cattgttttttcatttgtttgtttctaataacatggaaaattaaggaaaatatcataaaa 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cattgctttttcatttgtttgtttctaataacatggaaaattaaggaaaatatcataaaa 299
Query: 121 tatatgaagacatcagtaatgcattttggtaaaaattgggacttcatcatgttatcctga 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 300 tatatgaagacatcagtaatgcattttggtaaaaattgggacttcattatgttatcctga 359
Query: 181 ttcatcacaaataataaaacttttaatgtaaaaaaaaatctataggcctggataaaaaca 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 360 ttcatcacaaataataaaacttttaatgtaaaaaaaattctataggcctggataaaaaca 419
Query: 241 ttaataaa-tatcttcaatatatttatatattaataacaacacacaaatttttattatga 299
|| ||| |||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 420 gaaacaaaatatcttcaatatatttatatattaataacaacactcaaattttgattatga 479
Query: 300 tttttggtcaaaagacattaacaaagtctaccacactgtcatatagcctgagtgtcattt 359
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tttttggtcgaaagacattaacaaagtctaccacactgtcatatagcctgagtgtcattt 539
Query: 360 attttctagaggttttcctgaatacttcttgatgctcataacacacatacacacacacac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 attttctagaggttttcctgaatacttcttgatgctcataacacacatacacacacacac 599
Query: 420 acac--------------------ttccacatagtctttttttcatggttttttacacat 459
|||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 600 acacacacacacacacacacacacttccacatagtctatttttcatggttttttacacat 659
Query: 460 ataaacattttttcaatttattgatgagacaaagtgattttttttactttaatttcttta 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ataaacattttttcaatttattgatgagacaaagtgattttttttactttaatttcttta 719
Query: 520 atttctcaatgaaga 534
|||||||||||||||
Sbjct: 720 atttctcaatgaaga 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
