BAC Information

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BAC

Clone NameMSMg01-444I16
Chromosome3 (Build37)
Map Location 92,715,313 - 92,715,864
singlet/doubletsinglet
Overlap genenone
Upstream genePglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik
Downstream geneLce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444I16.T7 (MSMg01no444_i16.b1)MSMg01-444I16.TJ (MSMg01no444_i16.g1)
ACCAG533684AG533685
length792742
length of high quality
(start - end)		---553 (76 - 628)
definitionCHROMAT_FILE: MSMg01no444_i16.b1 PHD_FILE: MSMg01no444_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:28 2005CHROMAT_FILE: MSMg01no444_i16.g1 PHD_FILE: MSMg01no444_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGCTTGTTGTTATTGCATAACATGAGATTATCTCCGACATATGGCCGTCT
TTTTTTTATTCCCCGACGGGCACGGTGCGGTTATTCATCTGCACCCTTCA
CGTATCGCTATTCACTGCCGCCTGCCGGGTTTTATGTACGAGCCGCTTGC
GGTGGCCGTTGCTTGACTCCCTGTGGAGATAAATCATAATAAGACGGTGA
GTAGTAATGCTATAGGAGAAGATGCGCATTCTAAGGATACCTCATACTAC
ACTCTAATGCCTTACCAGCCTCCTCTTTAGTATCACCCTCTTAAATAGGG
CGCTAGCGTCGCATCGATTTTTGCTTGATTATTGGCGACTGCAACTACGT
GATATCCCCTTTTCGGTGTTTAATCATCAGAGATTTCCATGCTTGCGTTT
CAGAGTGTGTGGGTACTGCTTGGTACGAATGAATAGTTTTTTTCCCATTA
TGGTTTTATTGTCCATTGAGTTTGTTTTCGCCAGGCAAATTAGGGGTACC
CGATGCACAGGCGTTTATTAGTACCGGACTCAAGGCATAATCGCATATTT
TTGCATTTCGTCGGGGTCAATGTTAACCGGTTCGGGAACTTCCTTGGCCC
GGACGCGCGCAACTTCCAAGAATAATCGGTGGGCGTTTCCGCCCCCTTGG
CGTCTCTAACCTATGACGTCGGTAAAATGAGTCAATCATAGGAGAGAAGG
GGGTAGTGCATCAAGGCACACCAGGGGACCATATGCAGGGTAGCGCAAGC
CATATTACGGTGGCCTTTAGGCGGAATTGTCGCGTAACACAG

ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACTGGTACATCCTTATGTTCTTGA
TCCATATCTGAACTTCTGCAGTTAAGAAACACTGCAATAGTTGAGGTTGT
TTCTGGTTCCAATATTTCTTTGCCTTTCTTGTTGAAACACCTCTGCTTTG
CACTGTGCAAAGTCAGGTGAATGCGGTCTAGGTTACTGAAATAGCAGTTC
CTGTGACGGCTAAGGAACCTTATTGGAGTAGTCAGAAGGTCTCACAAACT
AAAAGTCATAGAGGCCTATTTATACTGGAGATGAATCTGAGGTTCTAAGA
TAGATCTTGGACGAAATAATGTCATCTGAGTCTTCTTAGAAAAAGGTATC
GACACCTGAAAATGTCCTGGTTCACTTCTTCAGGGCTTCTAGTATGAACC
CAGGAATAGTTAACTTATTTACCTCTCCAGAGATGAGTCTTTGGATGACA
GTGACTCAGAGGAAAGCGGCAAATATATCAATGCATCATTTGTGATGGAA
GGTATCCACACTCCAAAACCAGGAGCTTGGATGTTAGACTTGATGAGAAT
ATCAGTGTTAGAAACAAACTTGTCTGGGTTTAGGAGTACTCCTTTGAAAG
TTTCAGGAGGAAATTGATGAGGTCAACCAGTCATTTCTCTGAACACAGGA
TCTCTGCAGCTTCTAAAGGAATAGGCTGAAATGACCACATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_i16.g1 MSMg01no444_i16.g1 CHROMAT_FILE:
MSMg01no444_i16.g1 PHD_FILE: MSMg01no444_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:28 2005
         (553 letters)



>mm_chr3_92715113_92716064
          Length = 952

 Score =  977 bits (505), Expect = 0.0
 Identities = 541/553 (97%), Gaps = 1/553 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactggtacatccttatgttcttgatccatatctgaacttctgcagttaagaaacactgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 cactggtacatccttatgttcttgatccatatctgaacttctgcagttaagaaacactgc 693

                                                                       
Query: 61  aatagttgaggttgtttctggttccaatatttctttgcctttcttgttgaaacacctctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 aatagttgaggttgtttctggttccaatatttctttgcctttcttgttgaaacacctctg 633

                                                                       
Query: 121 ctttgcactgtgcaaagtcaggtgaatgcggtctaggttactgaaatagcagttcctgtg 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 cttcgcactgtgcaaagtcaggtgaatgcggtctaggttactgaaatagcagttcctgtg 573

                                                                       
Query: 181 acggctaaggaaccttattggagtagtcagaaggtctcacaaactaaaagtcatagaggc 240
           | || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 572 atggttaaggaaccttattggagtagtcagaaggtctcacaaactgaaagtcatagaggc 513

                                                                       
Query: 241 ctatttatactggagatgaatctgaggttctaagatagatcttggacgaaataatgtcat 300
           |||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ctaaggagactggagatgaatctgaggttctaagatagatcttggacgaaataatgtcat 453

                                                                       
Query: 301 ctgagtcttcttagaaaaaggtatcgacacctgaaaatgtcctggttcacttcttcaggg 360
           |||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||
Sbjct: 452 ctgagtcttcttagaaaa-ggcattgacacctgaaaatgacctggttcacttcttcaggg 394

                                                                       
Query: 361 cttctagtatgaacccaggaatagttaacttatttacctctccagagatgagtctttgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cttctagtatgaacccaggaatagttaacttatttacctctccagagatgagtctttgga 334

                                                                       
Query: 421 tgacagtgactcagaggaaagcggcaaatatatcaatgcatcatttgtgatggaaggtat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tgacagtgactcagaggaaagcggcaaatatatcaatgcatcatttgtgatggaaggtat 274

                                                                       
Query: 481 ccacactccaaaaccaggagcttggatgttagacttgatgagaatatcagtgttagaaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ccacactccaaaaccaggagcttggatgttagacttgatgagaatatcagtgttagaaac 214

                        
Query: 541 aaacttgtctggg 553
           |||||||||||||
Sbjct: 213 aaacttgtctggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 952
Length adjustment: 10
Effective length of query: 543
Effective length of database: 942
Effective search space:   511506
Effective search space used:   511506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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