Query= MSMg01no444_p20.b1 MSMg01no444_p20.b1 CHROMAT_FILE:
MSMg01no444_p20.b1 PHD_FILE: MSMg01no444_p20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:03 2005
(195 letters)
>mm_chr3_134020654_134021248
Length = 595
Score = 354 bits (183), Expect = e-102
Identities = 189/191 (98%)
Strand = Plus / Minus
Query: 1 acacattcagaagtctgccattgaggtgttcactagggttgtcttcatctgtattcctga 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 acacattcagaagtctaccattgaggtgttcactagggttgtcttcatctgtattcctga 332
Query: 61 ctggggacaatgcacaattctaagtccactcacacactcagtgtcttctggccacagaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctggggacaatgcacaattctaagtccactcacacactcagtgtcttctggccacagaca 272
Query: 121 gaaattcttgccacactgacatttttctgtacaaagatcttgattcttaaagaacattgc 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gaaattcttgccacattgacatttttctgtacaaagatcttgattcttaaagaacattgc 212
Query: 181 agggttgatgg 191
|||||||||||
Sbjct: 211 agggttgatgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space: 109769
Effective search space used: 109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no444_p20.g1 MSMg01no444_p20.g1 CHROMAT_FILE:
MSMg01no444_p20.g1 PHD_FILE: MSMg01no444_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:03 2005
(356 letters)
>mm_chr3_133856308_133857063
Length = 756
Score = 627 bits (324), Expect = 0.0
Identities = 332/336 (98%), Gaps = 3/336 (0%)
Strand = Plus / Plus
Query: 1 taggccaaaccatgtgtttgtgaagaaaacaggaatatattcctcagcatgcaaggcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggccaaaccatgtgtttgtgaagaaaacaggaatatattcctcagcatgcaaggcctc 260
Query: 61 aggagacccactattttatctttaacaggttaggaggctgaaagctagctaaatcgtaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggagacccactattttatctttaacaggttaggaggctgaaagctagctaaatcgtaga 320
Query: 121 gcccttgcctggcatatacaaagacctgggaaacgatgatgataattaggccaatctatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccttgcctggcatatacaaagacctgggaaacgatgatgataattaggccaatctatg 380
Query: 181 taaatgtactaaaattgaaattctgactttgcgtttaaagtaaaaacttaaacatgaaag 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 taaatgtactaaaattgaaattctgactttgcatttaaagtaaaaacttaaacatgaaag 440
Query: 241 caagtaataggaaaggcaggctaatcacagactagcacaaattcagataataggatt--- 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagtaataggaaaggcaggctaatcacagactagcacaaattcagataataggattcaa 500
Query: 298 atatatatatatatatatatatatatatatatatat 333
||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatatatatatatatatatatatatatatatatat 536
Score = 70.3 bits (36), Expect = 2e-16
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 316 atatatatatatatatatatatatatatatatatat 351
||||||||||||||||||||||||||||||||||||
Sbjct: 536 atatatatatatatatatatatatatatatatatat 501
Score = 70.3 bits (36), Expect = 2e-16
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 314 atatatatatatatatatatatatatatatatatat 349
||||||||||||||||||||||||||||||||||||
Sbjct: 536 atatatatatatatatatatatatatatatatatat 501
Score = 70.3 bits (36), Expect = 2e-16
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 312 atatatatatatatatatatatatatatatatatat 347
||||||||||||||||||||||||||||||||||||
Sbjct: 536 atatatatatatatatatatatatatatatatatat 501
Score = 70.3 bits (36), Expect = 2e-16
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 310 atatatatatatatatatatatatatatatatatat 345
||||||||||||||||||||||||||||||||||||
Sbjct: 536 atatatatatatatatatatatatatatatatatat 501
Score = 70.3 bits (36), Expect = 2e-16
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 308 atatatatatatatatatatatatatatatatatat 343
||||||||||||||||||||||||||||||||||||
Sbjct: 536 atatatatatatatatatatatatatatatatatat 501
Score = 70.3 bits (36), Expect = 2e-16
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 306 atatatatatatatatatatatatatatatatatat 341
||||||||||||||||||||||||||||||||||||
Sbjct: 536 atatatatatatatatatatatatatatatatatat 501
Score = 70.3 bits (36), Expect = 2e-16
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 304 atatatatatatatatatatatatatatatatatat 339
||||||||||||||||||||||||||||||||||||
Sbjct: 536 atatatatatatatatatatatatatatatatatat 501
Score = 70.3 bits (36), Expect = 2e-16
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 302 atatatatatatatatatatatatatatatatatat 337
||||||||||||||||||||||||||||||||||||
Sbjct: 536 atatatatatatatatatatatatatatatatatat 501
Score = 70.3 bits (36), Expect = 2e-16
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 300 atatatatatatatatatatatatatatatatatat 335
||||||||||||||||||||||||||||||||||||
Sbjct: 536 atatatatatatatatatatatatatatatatatat 501
Score = 70.3 bits (36), Expect = 2e-16
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 298 atatatatatatatatatatatatatatatatatat 333
||||||||||||||||||||||||||||||||||||
Sbjct: 536 atatatatatatatatatatatatatatatatatat 501
Score = 68.4 bits (35), Expect = 7e-16
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 297 tatatatatatatatatatatatatatatatatat 331
|||||||||||||||||||||||||||||||||||
Sbjct: 535 tatatatatatatatatatatatatatatatatat 501
Score = 68.4 bits (35), Expect = 7e-16
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 318 atatatatatatatatatatatatatatatatata 352
|||||||||||||||||||||||||||||||||||
Sbjct: 536 atatatatatatatatatatatatatatatatata 502
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 115
Number of extensions: 37
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 15
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space: 259209
Effective search space used: 259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
