BAC Information

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BAC

Clone NameMSMg01-445L04
Chromosome3 (Build37)
Map Location 11,167,731 - 11,167,889
singlet/doubletsinglet
Overlap genenone
Upstream genePmp2, Fabp9, Fabp4, 1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16, LOC670564, LOC383826, EG667978
Downstream geneLOC667999
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445L04.T7 (MSMg01no445_l04.b1)MSMg01-445L04.TJ (MSMg01no445_l04.g1)
ACCAG534567AG534568
length847999
length of high quality
(start - end)
159 (58 - 216)---
definitionCHROMAT_FILE: MSMg01no445_l04.b1 PHD_FILE: MSMg01no445_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:59 2005CHROMAT_FILE: MSMg01no445_l04.g1 PHD_FILE: MSMg01no445_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTACA
GTATCATTCCTATTGGATCAGTTAGTTGGGTGGTTGACCAAAGATACACA
ACATTTTAGTGTTGTGAAGATGGTAATTTTTTTCTGAGTTGTTTTCTTTG
TGAACCAAGGCTAACTTTAGTATGTCACCCAAGAAAGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTATTTCGTTAGTTTTCGTGTTTTTTTGTGCCGC
TTCTCTTTCTTTTTTAGTTTTTTCTGAATCCTTCTCTTGCTCTATACACC
CCTTTTAATGTTTTCCGCACCCCCTGGCCTTTTATTGTATTGTTTTTTTT
TTTCCCCCCCTTTTCTCGCGTTATTGTTTCTCTCTCCCCCCCCGTTTTCG
TTTATTATTTCTATGTTAAACATACTCATTTTTTTTTTCTTCATATTTGT
GTCTCCCCCCCCTTTCTTCTTTTCCCCTTTTCGCCCTATCCACCTTTCCT
TCAGCGTGCTTCATCTTATTTCACCCTTTTCCCACTCTCCCACATTCTTT
TATTTCCTCTATCCATTTTTTTTCTTCGACCCCTGTCTATTTCTCTTTTC
CTCTCTACTCATATCCCCTTTTTATTTCGACTCCTTCCTTTTTTACCTCC
GTTGCTTTTTCTATCCCATTTATACCACTATTTCATTCTCTATTCTCCTA
TCAACTTTTCGTTCCTTTACTCACCCCTTTCTGTTCTCTCCTCTCCTTCT
TCTTTTCTTATCACTTACACCAGATATGTTCCATCTGTTATACCTCCTTC
CTCTATTGTATATATCGTTCTCTCCCATGTGTCTCGTTGTCAATGCG
CAATCTAAAGACGTTACATTTGAGTTTTATAATCATTATAGGTGAAGCTA
TAGGAAGGATGTCGACGGAATTACTAATAATTGGAGAACAAGACGAGGAC
GCAAAAAGAGATAACCACACAATAGCTATCCAGCTCACACAACCGACCAT
CATACCTAACCTACCCATAAAACATACTGTAGAAAACCACAAAATAATCT
ATAATAAGAAATACCAAATGACTTTCCAATGTTTTACAAACTCGTCCGAT
GATTGTGTATCAACTTTCTTCGCAACTACGAATAAAACAGACATCCCCTT
ATAATACAGCGTGTATATCTCATCTGTATTTAACTCCCTTTCACACTGTT
GTTTCCCTCGCATTTACTTTCGTATTCTAATATTTGTTTTTGTTTAAAAC
TCATATTCACATAAAAACTCTTAACTCTAATAAAAATACACACCAATACA
ACCCAAGCATACAACATATAAATACATATACAATCCCCATGACCCAACTC
CCCAGTATCCCGACTTCACCCCCCCATACTCTATAAATAACCGATAAGCA
CATTAAACGTTACTCTTCATATACCTCATATATCAACACTTTTCCAACCT
TCCACCTAACCACTCTCCATTAACACCATTATGTATAGATGAGGACATGA
TACATCACAATTAGTTAAACCAACCCTTTACTCCCCTTTTAATACACCCT
ACTTACATATACATAATCCCTATTCATTCCGCATACAATAATTACATCCC
CGAAAACAATAGGGACAACCACTATCACCCCCCACATTATATGTCTAATT
TAATCATTCCTTACTCCCTTCCCTCCCAACCTTAAAATTAATATGAAACA
TCATGTAGATAAAACAAAATGAAAGTAAATAACATAGTTCAGTGCCTACC
CCCCACTTCCGCACGCCTGAACTCCCTATAATTCACCTTATTACCACACC
TCTCACTTCCGGATATACACCCCCATTTCTTTTATTGCGCTTACTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_l04.b1 MSMg01no445_l04.b1 CHROMAT_FILE:
MSMg01no445_l04.b1 PHD_FILE: MSMg01no445_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:59 2005
         (159 letters)



>mm_chr3_11167531_11168089
          Length = 559

 Score =  300 bits (155), Expect = 3e-86
 Identities = 158/159 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctattggatcagttagttgggtggttgaccaaagatacacaacattttagtgttgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctattggatcagttagttgggtggttgaccaaagatacacaacattttagtgttgtga 260

                                                                       
Query: 61  agatggtaatttttttctgagttgttttctttgtgaaccaaggctaactttagtatgtca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 agatggtaatttttttctgagttgttttctttgtgaaccaaggctaactttagtttgtca 320

                                                  
Query: 121 cccaagaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 159
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccaagaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space:    83201
Effective search space used:    83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)